Biological Sciences Publications
Year by Year

2011

Ana Barradas, Alberto F, Engelen AH, Serrão EA 2011. Fast sporophyte replacement after removal suggests banks of latent microscopic stages of Laminaria ochroleuca (Phaeophyceae) in tide pools in northern Portugal. Cahiers de Biologie Marine, In Press.

Alberto F, Raimondi P, Reed DC, Watson JR, Siegel DA, Mitarai S, Coelho NC, Serrão EA 2011. Isolation by oceanographic distance explains genetic structure for Macrocystis pyrifera in the Santa Barbara Channel. Molecular Ecology, In Press.

Wesener, S., V.Y. Potharla and Y.-Q. Cheng* 2011. Reconstitution of FK228 biosynthetic pathway revealing cross-talk between modular polyketide synthases and fatty acid synthase. Applied and Environmental Microbiology, 77:1501-1507 Online Publication

Potharla, V.Y., S. Wesener and Y.-Q. Cheng* 2011. New Insights into the Genetic Organization of FK228 Biosynthetic Gene Cluster in Chromobacterium violaceum No. 968. Applied and Environmental Microbiology, 77:1508-1511 Online Publication

Wang, C., L.M. Henkes, L.B. Doughty, M. He, D. Wang, F.-J. Meyer-Almes and Y.-Q. Cheng* 2011. Thailandepsins: bacterial products with potent histone deacetylase inhibition activities and broad-spectrum antiproliferative activities. ournal of Natural Products, (Epub ahead of print on 07/27/2011) Online Publication

Snyder H, He H, Owen H, Hanna C, Forst S. 2011. Role of Mrx fimbriae of Xenorhabdus nematophila in competitive colonization of the nematode host. Appl Environ Microbiol., 77: 7247-7254.

Morales-Soto, N. and Forst S. 2011. The xnp1 P2-like tail synthesis gene cluster encodes xenorhabdicin and is required for interspecies competition. J Bacteriol., 193(14):3624-32.

Snyder H, He H, Owen H.A., Hanna C, Forst S. 2011. Role of Mrx fimbriae of Xenorhabdus nematophila in competitive colonization of the nematode host. Appl Environ Microbiol., 77: 7247-7254.

Sugawara, M., G. R. Shah, M. J. Sadowsky, O. Paliy, J. Speck, A. W. Vail, and P.  Gyaneshwar. 2011. Expression and functional roles of Bradyrhizobium japonicum genes involved in the utilization of inorganic and organic sulfur compounds in free-living and symbiotic conditions. Mol. Plant-Microbe Interact., 24: 451-457.

Gyaneshwar, P., A. M. Hirsch, L. Moulin, W-M. Chen, G. N. Elliott, C. Bontemps, P. Estrada-de los Santos, E. Gross, F. B. dos Reis Junior, J. I. Sprent, J. P. W. Young, and E. K. James. 2011. Legume nodulating betaproteobacteria: diversity, host-range and future prospects. Mol. Plant-Microbe Interact., DOI: 10.1094 (in press).

Ma, J, A. M. Ibekwe, X. Yi, H. Wang, A. Yamazaki, D. E. Crowley, and C.-H. Yang. 2011. Persistence of Escherichia coli O157:H7 and Its Mutants in Soils. PLoS ONE, 6(8): e23191.

Li, Y. R., Y. Z. Che, H. S. Zou, Y. P. Cui, W. Guo, L. F. Zou, E. Biddle, C. H. Yang*, and G. Y. Chen*. 2011. Hpa2 required by HrpF to translocate Xanthomonas oryzae transcriptional activator-like effectors into rice for pathogenicity. Appl. Environ. Microbiol., 77: 3809-3818. (* coresponding authors)

Zeng Q., M. D. Laiosa, D. A. Steeber, E. M. Biddle, Q. Peng, and C. H. Yang. 2011. Cell individuality: the bistable gene expression of T3SS in Dickeya dadantii 3937. Mol. Plant-Microbe Interact., In Press

Yamazaki, A., J. Li, Q. Zeng, D. Khokhani, W. C. Hutchins, A. C. Yost, E. Biddle, E. J. Toone, X. Chen, C. H. Yang. 2011. Derivatives of plant phenolic compound affect the type III secretion system of Pseudomonas aeruginosa via a GacS/GacA two component signal transduction system. Antimicrob. Agents Chemother., In Press

2010

Li, D., Y.S. Chung, M. Gloyd, E. Joseph, R. Ghirlando, G.D. Wright, Y.-Q. Cheng, M.R. Maurizi, A. Guarne and J. Ortega* 2010. Acyldepsipeptide antibiotics induce the formation of a structured axial channel in ClpP: a model for the ClpX/ClpA bound state of ClpP. Chemistry & Biology, 17:959-969 Online Publication

Butzin, N. C., H. A. Owen, and M. L. P. Collins. 2010. A new system for heterologous expression of membrane proteins: Rhodospirillum rubrum. Prot. Exp. Purif., 70: 88-94.   Online Publication

Fodor, A., Fodor, A.M., Forst S., Hogan, J.S., Klein, M., Lengyel, K., Saringer, G., Stackebrandt, E., Taylor, J., Lehoczky, E. 2010. Comparative analysis of antibacterial activities of Xenorhabdus species on related and non-related bacteria in vivo. J. Microbiol and Antimicrobials., 2 (3), 30-35.

Ogier JC, Calteau A, Forst S., Goodrich-Blair H, Roche D, Rouy Z, Suen G, Zumbihl R, Givaudan A, Tailliez P, Médigue C, Gaudriault S. 2010. Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus. BMC Genomics., 11:568-578.

Gutzman, J.H. and Sive, H. 2010. Epithelial relaxation mediated by the myosin phosphatase regulator Mypt1 is required for brain ventricle lumen expansion and hindbrain morphogenesis. Development., Mar;137(5):795-804. **Featured Article.

Glazer AM, Wilkinson AW, Backer CB, Lapan SW, Gutzman J.H., Cheeseman IM, Reddien PW. 2010. The Zn finger protein Iguana impacts Hedgehog signaling by promoting ciliogenesis. Developmental Biology., Jan 1;337(1):148-56.

Flanagan RJ, Mitchell RJ, and Karron JD. 2010. Increased relative abundance of an invasive competitor for pollination, Lythrum salicaria, reduces seed number in Mimulus ringens. OECOLOGIA, In press. Online Publication

Flanagan RJ, Mitchell RJ, and Karron JD. 2010. Effects of multiple competitors for pollination on bumblebee foraging patterns and Mimulus ringens reproductive success. OIKOS, In press. Online Publication

Rhodes OE, Latch EK 2010. Wildlife reintroductions: conceptual development and application of theory. In: Molecular insights into natural resource conservation and management (eds DeWoody JA, Bickham JW, Michler C, Nichols K, Rhodes OE, Woeste K). Cambridge University Press, In Press

K. Sato, M. Naito, H. Yukitake, H. Hirakawa, M. Shoji, M. J. McBride, R. G. Rhodes, and K. Nakayama. 2010. A protein secretion system linked to bacteroidete gliding motility and pathogenesis. Proc. Natl. Acad. Sci. USA., 107:276-281. Online Publication

R. G. Rhodes, M. N. Samarasam, A. Shrivastava, J. M. van Baaren, S. Pochiraju, S. Bollampalli, and M. J. McBride. 2010. Flavobacterium johnsoniae gldN and gldO are partially redundant genes required for gliding motility and surface localization of SprB. J. Bacteriol., 192:1201-1211.  Online Publication

Sreevidya V. S., R. Hernandez-Oane, P. Gyaneshwar, M. Lara-Flores, J. K. Ladha, and P. M. Reddy 2010. Auxin distribution pattern regulates the initiation and radial position of lateral root development of rice. Plant Sci., 178: 531-538.

Bouhenni, R., G. Vora, J. Biffinger, S. Shirodkar, K. Brockman, R. Ray, P. Wu, B. Johnson, E. Biddle, M. Marshall, L. Fizgerald, B. Little, J. Fredrickson, A. Beliaev, B. Ringeison, D. Saffarini. 2010. The role of Shewanella oneidesis outer surface structures in extracellular electron transfer Electroanalysis, In Press.

Schnitzer, S.A. and W.P. Carson 2010. Lianas suppress tree regeneration and diversity in treefall gaps. Ecology Letters, In Press.

DeWalt, S.J, S.A. Schnitzer, J. Chave, F. Bongers, R.J. Burnham, D.B. Clark, C.E.N. Ewango, J.L. Gerwing, K. Ickes, D. Kenfack, M. Martínez-Ramos, J. Mascaro, H.C. Muller-Landau, M.P.E. Parren, N. Parthasarathy, D.R. Pérez-Salicrup, F.E. Putz, H.G. Romero-Saltos, D. Thomas 2010. Annual rainfall and seasonality predict pan-tropical patterns of liana density and basal area. Biotropica, In Press.

Ingwell, L.L, S.J. Wright, K.K. Becklund, S.P. Hubbell, S.A. Schnitzer 2010. The impact of lianas on 10 years of tree growth and mortality on Barro Colorado Island, Panama. Journal of Ecology, In Press.

Ulijasz AT*, Cornilescu G*, Cornilescu CC, Zhang J, Rivera M, Markley JL, Vierstra RD. 2010. Structural basis for the photoconversion of a phytochrome to the activated Pfr form. Nature, published online January 14th, 2010.

Yang, S., Peng, Q., Zhang, Q., Zou, L., Li, Y., Robert, C., Pritchard, L., Liu, H., Hovey, R., Wang, Q., Birch, P., Toth, I. K., and C.-H. Yang. 2010. Genome-wide identification of HrpL-regulated genes in the necrotrophic phytopathogen Dickeya dadantii 3937. PLoS ONE, 5(10): e13472.

Zeng, Q., Ibekwe, A. M., Biddle, E., and C.-H. Yang. 2010. Regulatory mechanisms of exoribonuclease PNPase and regulatory small RNA on T3SS of Dickeya dadantii. Mol. Plant-Microbe Interact., In press.

Yi, X., A. Yamazaki, E. Biddle, Q. Zeng, and C.-H. Yang. 2010. Genetic analysis of two phosphodiesterases reveals cyclic diguanylate regulation of virulence factors in Dickeya dadantii. Mol. Microbiol., 77:787-800.

Ibekwe, A. M., Papiernik, S. K., and C.-H. Yang. 2010. Influence of soil fumigation by methyl bromide and methyl iodide on rhizosphere and phyllosphere microbial community structure. J. Environ. Sci. Health B, 45: 427-436.

Ibekwe, A. M., Papiernik, S. K., Grieve, C. M., and C.-H. Yang. 2010. Influence of fumigants on soil microbial diversity and survival of E. coli O157:H7. J. Environ. Sci. Health B, 45: 416-426.

Li, Y., A. Yamazaki, L. Zou, E. Biddle, Q. Zeng, Y. Wang, H. Lin, Q. Wang, C.-H. Yang 2010. ClpXP protease regulates the Type III Secretion System of Dickeya dadantii 3937 and is essential for the bacterial virulence. Mol. Plant-Microbe Interact., 23:871-878.

Young EB, Tucker RC, Pansch L. 2010. Alkaline Phosphatase in Freshwater Cladophora-Epiphyte Assemblages: Cell Specific Staining Conditions and Regulation in Response to Phosphorus Supply. Journal of Phycology 46:, In Press.

2009

Bardy SL, Hosking E, Walker E, Strahler J, Andrews P, and Maddock J. 2009. DamX is a novel septal protein, and overexpression delays cell division likely through interference with septal peptidoglycan processing. , In preparation

Aldstadt, J.H., Bootsma, H.A., Ammerman, J.L. 2009. The chemical properties of water. In, Likens, G.E. (ed.), Encyclopedia of Inland Waters. Elsevier.,

Auer, M.T., Tomlinson, L.M., Higgins, S.N., Malkin, S.Y., Howell, E.T., Bootsma, H.A. 2009. Great Lakes Cladophora in the 21st century: same algae, different ecosystem. J. Great Lakes Res., (In Press)

Liao, Q., Bootsma, H.A., Xiao, J., Klump, J.V., Hume, A., Herman, M.L., Berg, P. 2009. Development of an in situ underwater particle image velocimetry (UWPIV) system and its deployment in Lake Michigan. Limnol. Oceanogr. Methods, (In Press)

Cheng, Y.-Q., J.M. Coughlin, S.-K. Lim, and B. Shen 2009. Type I polyketide synthases that require discrete acyltransferases. In Complex Enzymes: Polyketide, Terpenoids, Aminocoumarins and Carbohydrates Methods in Enzymology, 459:165-186. Online Publication

Guzei*, I.A., C. Wang, Y. Zhan, O.V. Dolomanov and Y.-Q. Cheng 2009. Pseudomerohedrally twinned monoclinic structure of unfolded ‘free’ nonactin: comparative analysis of its large conformational change upon encapsulation of alkali metal ions. Acta Crystallographica, C65:o521-o524 (Featured on cover page) Online Publication

Matter, A.M., S.B. Hoot, P.D. Anderson, S.S. Neves and Y.-Q. Cheng 2009. Valinomycin biosynthetic gene cluster in Streptomyces: conservation, ecology and evolution. PLoS ONE, 4(9):e7194. doi:10.1371/journal.pone.0007194. Online Publication

McBride*, M.J., G. Xie, E.C. Martens, A. Lapidus, B. Henrissat, R.G. Rhodes, E. Goltsman, W. Wang, J. Xu, D.W. Hunnicutt, A.M. Staroscik, T.R. Hoover, Y.-Q. Cheng, and J.L. Stein 2009. Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae revealed by genome sequence analysis. Applied and Environmental Microbiology, (In press; published online ahead of print on August 28, 2009).

Wang, C., S. Wesener, H, Zhang and Y.-Q. Cheng 2009. An FAD-dependent pyridine nucleotide-disulfide oxidoreductase is specifically involved in disulfide bond formation in FK228 anticancer depsipeptide. Chemistry & Biology, 16:585-593. Online Publication

Dey, M., Chiu, E., Velyvis, A., Kay, L. E., Sicheri, F., Deter T. E., 2009. Requirement for kinase-induced conformational change in eIF2a restricts phosphorylation of Ser51 , communicated

Dev, K., Santangelo T. J., Rothenburg, S., Neculai, D., Dey, M., Sicheri, F., Dever, T. E., Reeve, J. N., Hinnebusch, A. G. 2009. Archaeal aIF2B interacts with eukaryotic translation initiation factors eIF2alpha and eIF2Balpha: Implications for aIF2B function and aIF2B regulation. Journal of Molecular Biology, 392, 701-22.

Dunn PO, Lifjeld JT, Whittingham LA. 2009. Multiple mating by female tree swallows improves offspring immunocompetence. Behavioral Ecology and Sociobiology, (in press).

Morales-Soto, N., Snyder, H. and Forst, S. 2009. Interspecies Competition in a Bacteria–Nematode Mutualism. In Defensive Mutualism in Microbial Symbiosis (ed) White, J.F. and Torres, M.S., pp 117-128

Park,D., Ciezki,K., van der Hoeven,R., Singh,S., Reimer,D., Bode, H. and Forst, S. 2009. Genetic analysis of xenocoumacin antibiotic production in the mutualistic bacterium Xenorhabdus nematophila Molecular Microbiology, 73(5), 938-949.

van der Hoeven, R and Forst, S. 2009. OpnS, an outer membrane porin of Xenorhabdus nematophila, confers a competitive advantage for growth in the insect host J. Bacteriology, 191 (17) 5471-5479.

Stelzer RV, Hutz RJ. 2009. Gold nanoparticles enter rat ovarian granulosa cells and subcellular organelles, and alter in-vitro estrogen accumulation. J Reprod Develop, 55:6, 2009 Online Publication

Karron, J. D., K. G. Holmquist, R. J. Flanagan, and R. J. Mitchell. 2009. Pollinator visitation patterns strongly influence among-flower variation in selfing rate. Annals of Botany, 103: 1379–1383. Online Publication

Flanagan, R. J., R. J. Mitchell, D. Knutowski, and J. D. Karron 2009. Interspecific pollinator movements reduce pollen deposition and seed production in Mimulus ringens (Phrymaceae). American Journal of Botany, 96: 809–815. Online Publication

Mitchell, R. J., R. E. Irwin, R. J. Flanagan, and J. D. Karron 2009. Viewpoint: Ecology and evolution of plant-pollinator interactions. Annals of Botany, 103: 1355-1363. Online Publication

Mitchell, R. J., R. J. Flanagan, B. J. Brown, N. M. Waser, and J. D. Karron 2009. New frontiers in competition for pollination. Annals of Botany, 103: 1403–1413. Online Publication

Latch EK, Heffelfinger JA, Fike JA, Rhodes OE 2009. Species-wide phylogeography of North American mule deer: cryptic glacial refugia and postglacial recolonization. Molecular Ecology, 18, 1730-1745. Online Publication

Latch EK, Ivy JA 2009. Meshing molecules and management: a new era for natural resource conservation. Biology Letters, 5, 3-4. Online Publication

M. J. McBride, G. Xie, E. C. Martens, A. Lapidus, B. Henrissat, R. G. Rhodes, E. Goltsman, W. Wang, J. Xu, D. W. Hunnicutt, A. M. Staroscik, T. R. Hoover, Y. Q. Cheng, and J. L. Stein. 2009. Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis. Appl. Environ. Microbiol. , 75:6864-6875. Online Publication

McBride, M.J., G. Xie, E.C. Martens, A. Lapidus, B. Henrissat, R.G. Rhodes, E. Goltsman, W. Wang, J. Xu, D.W. Hunnicutt, A.M. Staroscik, T.R. Hoover, Y.-Q. Cheng, and J.L. Stein 2009. Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae revealed by genome sequence analysis. Applied and Environmental Microbiology, (In press; published online ahead of print on August 28, 2009).

Hull-Sanders HM, Johnson RH, Owen HA and Meyer GA. 2009. Effects of polyploidy on secondary chemistry, physiology, and performance of native and invasive genotypes of Solidago gigantea (Asteraceae). American Journal of Botany, 96: 762-770

Hull-Sanders, H.M., R.H. Johnson, H.A. Owen and G.A. Meyer 2009. Influence of polyploidy on insect herbivores of native and invasive genotypes of Solidago gigantea (Asteraceae). Plant Signaling & Behavior, in press

Mills JE, Reinartz JA, Meyer GA and Young EB. 2009. Exotic shrub invasion in an undisturbed wetland has little community-level effect over 15-year period. Biological Invasions, doi: 10.1007/s10530-008-9359-2

Hull-Sanders HM, Johnson RH, Owen HA and Meyer GA. 2009. Effects of polyploidy on secondary chemistry, physiology, and performance of native and invasive genotypes of Solidago gigantea (Asteraceae). American Journal of Botany, 96: 762-770 Online Publication

Hull-Sanders, H.M., R.H. Johnson, H.A. Owen and G.A. Meyer 2009. Influence of polyploidy on insect herbivores of native and invasive genotypes of Solidago gigantea (Asteraceae). Plant Signaling & Behavior, 4:893-895 Online Publication

Cummings S. P., P. Gyaneshwar, M. Andrews, D. Humphry, G. N. Elliott, A. Nelson, C. Orr, D. Pettitt, G. R. Shah, S. Santos, H. B. Krishnan, P. Vinuesa, D. Odee, M. Moreira, J. I. Sprent, J. P. W. Young, and E. K. James. 2009. Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia. Environ. Microbiol, 11: 2510-2525.

Raicu, V, Stoneman, MR, Fung, R, Melnichuk, M, Jansma DB, Rath, S, Pisterzi, LF, Fox, M, Wells, JW, Saldin, DK. 2009. Determination of supramolecular structure and spatial distribution of protein complexes in living cells. Nature Photonics, 3, 107-113. Online Publication

Stoneman, MR, Fox, M, Zeng, C, Raicu, V. 2009. Real-time monitoring of two-photon photopolymerization for use in fabrication of microfluidic devices for biological investigations. Lab on a Chip, published online (DOI: 10.1039/b816993d); also to appear in print, Online Publication

Mills, J.E., J.A. Reinartz, G. A. Meyer and E. B. Young. 2009. Exotic shrub invasion in an undisturbed wetland has little community-level effect over a 15-year period. Biological Invasions, doi: 10.1007/s10530-008-9359-2

Charania, M., K.Brockman, Y. Zhang, g. Pinchuk, A. Belaiev, J. Fredrickson and D. Saffarini. 2009. Involvement of a class III adenylate cyclase in the regulation of anaerobic respiration in Shewanella oneidensis MR-1. J. Bacteriol., 191:4298-4306. Online Publication

Reardon, C., A. Dohnalkova, P. Nachimuthu, D. Kennedy, D. Saffarini, B. Arey, L. Shi, Z. Wang, D. Moore, J. McLean, D. Moyles, M. Marshall, J. Zachara, J. Fredrickson, A. Beliaev. 2009. Role of outer-membrane cytrochromes MtrC and OmcA in the biomineralization of ferrihydrite by Shewanella oneidensis MR-1. Geobiology, 8:56-58.

Cai, Z.Q., S.A. Schnitzer, F. Bongers 2009. Seasonal differences in leaf-level physiology give lianas a competitive advantage over trees in a tropical forest. Oecologia, 161: 25-33.

Cai, Z.Q., S.A. Schnitzer, B. Wen, Y.J. Chen, F. Bongers 2009. The liana community in three tropical forest types in Xishuangbanna, SW China. Journal of Tropical Forest Science, 21: 252-264.

HilleRisLambers, J., W.S. Harpole, S.A. Schnitzer, D. Tilman, P.B. Reich 2009. The effects of elevated CO2, nitrogen deposition and declining diversity on seed production of prairie grasses and forbs. Ecology, 90: 1810-1820.

Sánchez-Azofeifa, G.A., K. Castro, S.J. Wright, J. Gamon, M. Kalacska, B. Rivard, S.A. Schnitzer, J.L. Feng 2009. Differences in leaf traits, leaf internal structure, and spectral reflectance between two communities of lianas and trees. Remote Sensing and the Environment, 113: 2076-2088.

Sánchez-Azofeifa, G.A., M. Kalacska, M.M. do Espírito-Santo G.W. Fernandes, S.A. Schnitzer 2009. Tropical dry forest succession and the contribution of Lianas to Wood Area Index (WAI). Forest Ecology and Management, 258: 941-948.

Cianelli, D., M. Uttieri, J.R. Strickler and E. Zambianchi. 2009. Zooplankton encounters in patchy particle distributions. Ecol. Model., 220, 596-604.

Brandon W. Kusik, Dena R. Hammond, and Ava J. Udvadia 2009. Transcriptional regulatory regions of gap43 needed in developing and regenerating retinal ganglion cells. Developmental Dynamics, in press.

Schmoldt A, Forecki J, Hammond DR, and Udvadia AJ. 2009. Exploring differential gene expression in zebrafish to teach basic molecular biology skills. Zebrafish, 6: 187-199

Ulijasz AT*, Falk SP*, Weisblum B. 2009. Phosphorylation of the RitR DNA-binding domain by a Ser-Thr phosphokinase: implications for global gene regulation in the streptococci. Mol. Microbiol., 71: 382-90.

Ulijasz AT, Cornilescu G, von Stetten D, Cornilescu C, Velazquez Escobar F, Zhang J, Stankey RJ, Rivera M, Hildebrandt P, Vierstra RD. 2009. Cyanochromes are blue/green light photoreversible photoreceptors defined by a stable double cysteine linkage to a phycoviolobilin-type chromophore. J. Biol. Chem., 284: 29757-72.

Eberhard WG, Rodríguez RL & Polihronakis M. 2009. Pitfalls in understanding the functional significance of genital allometry. Journal of Evolutionary Biology, (in press). Online Publication

Klump JV, Fitzgerald SA, Waples JT. 2009. Benthic biogeochemical cycling, nutrient stoichiometry, and carbon and nitrogen mass balances in a eutrophic freshwater bay. Limnology & Oceanography, (in press).

Dunn PO, Lifjeld JT, Whittingham LA. 2009. Multiple mating by female tree swallows improves offspring immunocompetence. Behavioral Ecology and Sociobiology, (in press).

Ibekwe, A M., S. Papiernik, C. Grieve, and C.-H. Yang. 2009. Persistence of Escherichia coli O157:H7 on the Rhizosphere and Phyllosphere of lettuce. Lett. Appl. Microbiol., 49:784-790.

Li Y., Q. Peng, D. Selimi, Q. Wang, A. O. Charkowski, X. Chen, and C.-H. Yang. 2009. The plant phenolic compound p-coumaric acid represses the Dickeya dadantii type III secretion system. Appl. Environ. Microbiol., 75:1223-1228.

Wang S., L.-Y. Chang, Y.-J. Wang, Q. Wang, C.-H. Yang, R.-H. Mei. 2009. Nanoparticles affect the survival of bacteria on leaf surfaces. FEMS Microbiol. Ecol., 28: 182-191.

Young EB and Janssen J. 2009. Ecological Processes across the salinity divide: Contrasts and comparisons in marine and Great Lakes ecosystems. Bulletin of the Ecological Society of America., 90, 115-133.

Young EB, Berges JA and Dring MJ. 2009. Physiological responses of marine intertidal algae to N deprivation and resupply of nitrate and ammonium. Physiologia Plantarum, 135: 400–411.

Choi CJ, Berges JA, Young EB. 2009. Rapid Detection of Dissolved Toxins Using Chlorophyll a Fluorescence: Variable Responses Among Diverse Freshwater Microalgae. Submitted.,

Mills JE, Reinartz J, Meyer GA , Young EB. 2009. Consequences of glossy buckthorn (Rhamnus frangula) invasion of a large wetland complex. Biological Invasions., DOI 10.1007/s10530-008-9359-2.

2008

Berges JA, Mulholland MR. 2008. Enzymes and nitrogen cycling. In: Capone DG, Bronk DA, Mulholland MR, Carpenter EJ (eds.) Nitrogen in the Marine Environment. Second ed. Elsevier.,

Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret JP, Chiovitti A, Choi CJ, Coesel S, De Martino A, Detter JC, Durkin C, Falciatore A, Fournet J, Haruta M, Huysman MJJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kroger N, Kroth PG, La Roche J, Lindquist E, Lommer M, Martin-Jezequel V, Lopez PJ, Lucas S, Mangogna M, McGinnis K, Medlin LK, Montsant A, Oudot-Le Secq MP, Napoli C, Obornik M, Parker MS, Petit JL, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H, Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A, Wyrwicz LS, Rokhsar DS, Weissenbach J, Armbrust EV, Green BR, Van De Peer Y, Grigoriev IV. 2008. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature, 456, 239-244.

Bootsma, H.A., Maybruck, B.T., Faude, S.A., Schafer, J.S. 2008. Modeling of thermal impacts on benthic algae. In Proceedings: Second Thermal Ecology and Regulation Workshop: October 2-3, 2007. EPRI, Palo Alto, CA: 2008. 1016809., Pages 12-1 – 12-10.

Consi, T.R., Anderson, G., Barske, G., Bootsma, H., Hansen, T., Janssen, J., Klump, V., Paddock, R., Szamania, D., Verhein, K., Waples, J.T. 2008. Real time observation of the thermal bar and spring stratification of Lake Michigan with the GLUCOS coastal observatory. Proceedings of the MTS/IEEE Oceans 2008 Conference,, Quebec City, Canada.

Ruddy, B.A., Qadah, D.T., Aldstadt, J.H. III, Bootsma, H.A. 2008. Improving analytical confidence in the determination of PCBs in complex matrices by a sequential GC-MS/MS approach. Intern. J. Environ. Anal. Chem., 88(5), 337-351.

Cheng Y-Q. 2008. Sequences for FK228 biosynthesis and methods of synthesizing FK228 and FK228 analogs. , PCT/US08/053473.

Kapfer, J. M., J. R. Coggins and R. Hay. 2008. Spatial Ecology and Habitat Selection of Bullsnakes (Pituophis catenifer sayi) at the Northern Periphery of their Geographic Range. Copeia, 2008: 816-826.

Kapfer, J., J.R. Coggins and R. Hay. 2008. Estimates of population size, measurements of sex ratios, and reported mortality rates for Bullsnakes (Pituophis catenifer sayi) at a site in the upper Midwestern United States. Journal of Herpetology, 42: 256-269.

Kapfer, J.M., M.J. Pauers, J.R. Coggins and R.Hay. 2008. Environmental, behavioral, and habitat variables influencing body temperature in radio-tagged bullsnakes, Pituophis catenifer sayi. Journal of Thermal Biology, 33: 174-179.

Lee, K. P. K., Dey, M., Dante, N., Cao, C., Dever, T. E., Sicheri, F. 2008. Structure of the dual enzyme Ire1 reveals the basis for catalysis and regulation in nonconventional RNA splicing. Cell, 132, 89-100.

Dunn PO, Whittingham LA, Freeman-Gallant CR. 2008. Geographic variation in the function of ornaments in the common yellowthroat. Journal of Avian Biology, 39, 66-72.

Armenta JK, Dunn PO, Whittingham LA. 2008. Quantifying avian sexual dichromatism: a comparison of methods. of Experimental Biology, 211, 2423-2430.

Armenta JK, Dunn PO, Whittingham LA. 2008. Effects of specimen age on plumage color. Auk, 125, 803-808.

Garvin JC, Dunn PO, Whittingham LA, Steeber DA, Hasselquist D. 2008. Do male ornaments signal immunity in the common yellowthroat? Behavioral Ecology, 19, 54-60.

van der Hoeven, R., Betrabet, G. and Forst, S. 2008. Characterization of the gut bacterial community in Manduca sexta and effect of antibiotics on bacterial diversity and nematode reproduction. FEMS Microbiol Letters, 286: 249-256.

Helmstetter, F.J., Parsons, R.G. & Gafford, G.M. 2008. Macromolecular synthesis, distributed synaptic plasticity, and fear conditioning. Neurobiology of Learning and Memory, 89,324-337.

Shin, M.S., Bailey, D.J., Hillard, C.J. & Helmstetter, F.J. 2008. Down regulating µ receptors in the basolateral complex of the amygdala prevents antinociception in the rat. Korean Journal of Experimental Psychology, 20(4), 285-302.

Hoot, S. B., J. Kramer, and M. T. K. Arroyo. 2008. Phylogenetic position of the South American dioecious genus, Hamadryas, and related Ranunculeae (Ranunculaceae). International Journal of Plant Sciences, 169: 433-443. Online Publication

T King Heiden, C Struble, M. Hessner, RJ Hutz, MJ Carvan, III. 2008. Molecular targets of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) within the zebrafish ovary: Insights into TCDD’s reproductive toxicity. Reprod Toxicol, 25, 47-57. Online Publication

Orlova M., Barrett L., Kuchin S. 2008. Detection of endogenous Snf1 and its activation state: application to Saccharomyces and Candida species. Yeast, 25, 745-754.

Latch EK, DG Scognamillo, JA Fike, MB Chamberlain, and OE Rhodes 2008. Deciphering ecological barriers to North American river otter (Lontra canadensis) gene flow in the Louisiana landscape. Journal of Heredity, 99, 265-274. Online Publication

Latch EK, RA Amann, JP Jacobson, and OE Rhodes 2008. Competing hypotheses for the etiology of cryptorchidism in Sitka black-tailed deer: An evaluation of evolutionary alternatives. Animal Conservation, 11, 234-246. Online Publication

Drauch AM, EK Latch, JA Fike and OE Rhodes 2008. Evaluation of a remnant lake sturgeon population's utility as a source for reintroductions. Conservation Genetics, 9, 1195-1209. Online Publication

Jarrell KF, McBride MJ. 2008. The surprisingly diverse ways that prokaryotes move. Nature Rev Microbiol, 6, 466-476. Online Publication

Nelson SS, Bollampalli S, McBride MJ. 2008. SprB is a cell-surface component of the Flavobacterium johnsoniae gliding motility machinery. J Bacteriol, 190, 2851-2857. Online Publication

Meyer GA and Hull-Sanders, HM. 2008. Altered patterns of growth, physiology and reproduction in invasive genotypes of Solidago gigantea. Biological Invasions, 10, 303-317.

Bott T, Meyer GA and Young EB. 2008. Nutrient limitation and morphological plasticity of the carnivorous pitcher plant Sarracenia purpurea in contrasting wetland environments. New Phytologist, 180: 631-641.

Boateng KA, Yang X, Dong F, Owen HA and Makaroff CA. 2008. SWI1 is required for meiotic chromosome remodeling events. Molecular Plant, 1,620-633. Online Publication

Jia G, Liu X, Owen HA and Zhao D. 2008. Signaling of cell fate determination by the TPD1 small protein and EMS1 receptor kinase. Proc Natl Acad Sci USA., 105,2220-2225. Online Publication

Lovern SB, Owen HA, Klaper R. 2008. Electron microscopy of gold nanoparticle intake in the gut of Daphnia magna. Nanotoxicology, 2,43-48. Online Publication

Yang C, Owen HA and Yang P. 2008. Dimeric heat shock protein 40 binds radial spokes for generating coupled power strokes and recovery strokes of 9+2 flagella. J Cell Biol, 180,403-415. Online Publication

Quinn CC and Wadsworth WG 2008. Axon Guidance: Asymmetric signaling orients polarized outgrowth. Trends in Cell Biology, 18:597-603. Online Publication

Quinn CC, Pfeil DS, Wadsworth WG 2008. Ced-10/Rac1 mediates axon guidance by regulating the asymmetric distribution of MIG-10/lamellipodin. Current Biology, 18:808-13. Online Publication

Rodríguez RL, Sullivan LM, Snyder RL & Cocroft RB. 2008. Host shifts and the beginning of signal divergence. Evolution, 62, 12-20. Online Publication

Fredrickson, J., M. Romine, A. Beliaev, J. Auchtung, M. Driscoll, T. Gardner, K. Nealson, A. Osterman, G. Pinchuk, J. Reed, D. Rodionov, J. Rodrigues, D. Saffarini, M. Serres, A. Spormann, I. Zhulin and J. Tiedje. 2008. Towards environmental systems biology of Shewanella. Nat. Rev. Microbiol., 6: 592-603. Online Publication

Marshall, M., A. Plymale, D. Kennedy, L. Shi, Z. Wang, S. Reed, A. Dohnalkova, C. Simonson, C. Liu, D. Saffarini, M. Romine, J. Zachara, A. Beliaev and J. Fredrickson. 2008. Hydrogenase- and outer membrane c-type cytochrome- facilitated reduction of technetium(VII) by Shewanella oneidensis MR-1. Environ. Microbiol., 10:125-136. Online Publication

McLean, J. S., G. Pinchuk, O. Geydebrekht, C. Bilskis, B. Zakrajsek, E. Hill, D. Saffarini, M. Romine, Y. Gorby, J. Fredrickson and A. Beliaev. 2008. Oxygen-dependent autoaggregation in Shewanella oneidensis MR-1. Environ. Microbiol., 10:1861-1876. Online Publication

Schnitzer, SA, Londré RA, Klironomos J, Reich PB. 2008. Biomass and toxicity responses of poison ivy (Toxicodendron radicans) to elevated atmospheric CO2: Comment. Ecology, 89: 581-585.

Schnitzer, SA, Rutishauser S Aguilar S. 2008. Supplemental protocol for liana censuses. Forest Ecology and Management, 255: 1044-1049.

Mascaro J., Becklund K, Hughes F, Schnitzer, SA. 2008. Limited native plant recruitment in exotic-dominated forests in Hawai’i. Forest Ecology & Management, 256: 593-606.

Paine, CET, Harms KE, Schnitzer SA, Carson WP. 2008. Weak competition among tropical tree seedlings: implications for species coexistence. Biotropica, 40: 432-440.

Garrido-Pérez, E.I., J.M. Dupuy, R. Durán-García, G. Gerold, S.A. Schnitzer, M. Ucan-May 2008. Structural effects of lianas and hurricane Wilma on trees in Yucatan peninsula, Mexico. Journal of Tropical Ecology, 24: 559-562.

Kasl, E., N. Giebel and J.R. Strickler. 2008. Anti-Predator Swimming Behavior in Daphnia. MarSci, 5, 1-7.

Peñalva-Arana, D.C., J.R. Strickler and B. A. Feinberg. 2008. Real-Time Assessment of Fluid Flow Generated by Appendage Movements of Daphnia Using Standing Square-Wave Chronamperometry. Anal. Chem., 80, 7499–7503.

Sikorski, A.M., Hebert, N., & Swain, R.A. 2008. Conjugated linoleic acid (CLA) inhibits new capillary growth in the mammalian brain. Brain Research, 1213, 35-40.

Udvadia AJ. 2008. 3.6 kb genomic sequence from Takifugu capable of promoting axon growth associated gene expression in developing and regenerating zebrafish neurons. Gene Expression Patterns, 8, 382-388. Online Publication

Kusik BW, Carvan MJ 3rd, Udvadia AJ. 2008. Detection of Environmental Oxidative Stress using EPRE reporter zebrafish. Marine Biotechnology, 10, 750-757. Online Publication

Ulijasz AT, Cornilescu G, von Stetten D, Kaminski S, Mroginski MA, Zhang J, Bhaya D, Hildebrandt P, Vierstra RD. 2008. Characterization of two thermostable cyanobacterial phytochromes reveals global movements in the chromophore-binding domain during photoconversion. J. Biol. Chem, 283: 21251-66.

Cornilescu G*, Ulijasz AT*, Cornilescu CC, Markley JL, Vierstra RD. 2008. Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground state. J. Mol. Biol., 383: 403-13.

Erickson MG, Ulijasz AT, Weisblum B. 2008. Screening for compounds that affect the interaction between bacterial two-component signal transduction response regulator protein and cognate promoter DNA. Methods Mol. Med., 142: 215-22.

Armenta JK, Dunn PO, Whittingham LA. 2008. Effects of specimen age on plumage color. Auk, 125, 803-808.

Armenta JK, Dunn PO, Whittingham LA. 2008. Quantifying avian sexual dichromatism: a comparison of methods. Journal of Experimental Biology, 211, 2423-2430.

Dunn PO, Whittingham LA, Freeman-Gallant CR. 2008. Geographic variation in the function of ornaments in the common yellowthroat. Journal of Avian Biology, 39, 66-72.

Garvin JC, Dunn PO, Whittingham LA, Steeber DA, Hasselquist D. 2008. Do male ornaments signal immunity in the common yellowthroat? Behavioral Ecology, 19, 54-60.

Moyle RG, Slikas B, Whittingham LA, Winkler DW, Sheldon FH. 2008. Phylogeny of New World martins (Hirundinidae: Progne) estimated from mitochondrial cytochrome b DNA sequences. Wilson Journal of Ornithology, 120, 683-691.

O’Grady, E and Wimpee, C. 2008. Mutations in the lux Operon of Natural Dark Mutants in the Genus Vibrio. Appl Environ Microbiol, 74, 61-66.

Glasner, J. D., M. Marquez-Villavicencio, H.-S. Kim, C. E. Jahn, B. Ma, B. S. Biehl, A. I. Rissman, B. Mole, X. Yi, C.-H. Yang, J. L. Dangl, S. R. Grant, N. T. Perna1, A. O. Charkowski. 2008. Niche-specificity and the variable fraction of the Pectobacterium pan-genome. Mol. Plant-Microbe Interact., 21:1549-60.

Li Y., Q. Peng, D. Selimi, Q. Wang, A. O. Charkowski, X. Chen, C.-H. Yang. 2008. The plant phenolic compound p-coumaric acid represses the Dickeya dadantii type III secretion system. Appl. Environ. Microbiol., 75:1223-1228.

Yang L., C.-H. Yang, and J. Li. 2008. Adhesion and Retention of a Bacterial Phytopathogen Erwinia Chrysanthemi in Biofilm-Coated Porous Media. Environ. Sci. Technol., 42: 159–165.

Yang, S., Q. Peng, M. San Francisco, Y. Wang, Q. Zeng, and C.-H. Yang. 2008. Type III secretion system genes of Dickeya dadantii 3937 are induced by plant phenolic acids. PLoS ONE, 3(8): e2973.

Yang, S., Q. Peng, Q. Zhang, X. Yi, C. J. Choi, R. M. Reedy, A. O. Charkowski, and C.-H. Yang. 2008. Dynamic regulation of GacA in type III secretion system, pectinase gene expression, pellicle formation, and pathogenicity of Dickeya dadantii. Mol. Plant-Microbe Interact., 21:133-142.

Yap, M.-N., C. Rojas, C.-H. Yang, and A. O. Charkowski. 2008. The response regulator HrpY of Dickeya dadantii 3937 regulates virulence genes not linked to the hrp cluster. Mol. Plant-Microbe Interact., 21: 304-314.

Yap, M.-N., C. Rojas, C.-H. Yang, and A. O. Charkowski. 2008. The response regulator HrpY of Dickeya dadantii 3937 regulates virulence genes not linked to the hrp cluster. Mol. Plant-Microbe Interact., 21: 304-314.

Bott T, Meyer GA, Young EB. 2008. Nutrient limitation and morphological plasticity of the carnivorous pitcher plant Sarracenia purpurea in contrasting wetland environments. New Phytologist, 180, 631-641.

Jia, G, Liu, X, Owen, HA and Zhao, D. 2008. Signaling of cell fate determination by the TPD1 small protein and EMS1 receptor kinase. Proc Natl Acad Sci USA, 105, 2220-2225. Online Publication

2007

Bardy SL and Maddock JR. 2007. Polar explorations: Recent insights into the polarity of bacterial proteins. Curr. Opin. Microbiol., 10(6): 617-23.

Montsant A, Allen AE, Coesel S, De Martino A, Falciatore A, Mangogna M, Siaut M, Heijde M, Jabbari K, Maheswari U, Rayko E, Vardi A, Apt KE, Berges JA, Chiovitti A, Davis AK, Thamatrakoln K, Hadi MZ, Lane TW, Lippmeier JC, Martinez D, Parker MS, Pazour GJ, Saito MA, Rokhsar DS, Armbrust EV, Bowler C. 2007. Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana. J Phycol, 43, 585-604.

Ribalet F, Berges JA, Ianora A, Cassotti R. 2007. Growth inhibition of cultured marine phytoplankton by toxic algal-derived polyunsaturated aldehydes. Aquat Toxicol, 85, 219-227.

Young EB, Dring MJ, Berges JA. 2007. Distinct patterns of nitrate reductase activity in brown algae: light and ammonium sensitivity in Laminaria digitata is absent in Fucus species. J Phycol, 43, 1200-1208.

Young EB, Dring MJ, Savidge G, Birkett DA, Berges JA. 2007. Seasonal variations in nitrate reductase activity and internal N pools in intertidal brown algae are correlated with ambient nitrate concentrations. Plant Cell Environ, 30, 764-774.

Consi, T.R., Barske, G., Bootsma, H., Hansen, T., Janssen, J., Kipp, J., Klump, B., Paddock, R., Szmania, D., Waples, J.T. 2007. The Great Lakes Urban Coastal Observing System (GLUCOS): Results of first deployments in coastal Lake Michigan. Proceedings of the MTS/IEEE Oceans 2007 Conference, Vancouver, BC.

Guildford, S.J., Bootsma, H.A., Taylor, W.D., Hecky, R.E. 2007. High variability of phytoplankton photosynthesis in response to environmental forcing in oligotrophic Lake Malawi/Nyasa. J. Great Lakes Res., 33(1), 170-185.

Cheng Y-Q, Yang M and Matter AM. 2007. Characterization of a gene cluster responsible for the biosynthesis of anticancer agent FK228 in Chromobacterium violaceum No. 968. Applied and Environmental Microbiology73, 3460-3469.,

Shen B, Cheng Y-Q, Christenson SD, Jiang H, Ju J, Kwon H-J, Lim SK, Liu W, Nonaka K, Seo J-W, Smith WC, Standage S, Tang G-L, Van Lanen S and Zhang J. 2007. Polyketide biosynthesis beyond the type I, II, and III polyketide synthase paradigms: a progress report. In ACS symposium series 955, Polyketides: Biosynthesis, Biological Activities, and Genetic Engineering.  Rimando AM, Baerson SR eds., ACS, pp154-166.

Tang G-L, Cheng Y-Q and Shen B. 2007. Chain initiation in the leinamycin-producing hybrid non-ribosomal peptide/ polyketide synthetase from Streptomyces atroolivaceus S-140: discrete, monofunctional adenylation enzyme and peptidyl carrier protein that directly load (D)-alanine. Journal of Biological Chemistry, 282, 20273-20282.

J. R. Coggins. 2007. Helminth communities in five species of sympatric amphibians from adjacent ephemeral ponds in southeastern Wisconsin. Journal of Parasitology, 93: 755-760.

Dey, M., Cao, C., Sicheri, F., and Dever, T. E. 2007. Conserved salt-bridge interactions required for activation of protein kinases PKR, GCN2 and PERK. Journal of Biological Chemistry, 282, 6653-6660.

Dunn PO, Whittingham LA. 2007. Travel costs influence extra-pair mate choice in female tree swallows. Behavioral Ecology and Sociobiology, 61, 449-454.

Abroe B, Garvin JC, Pedersen MC, Whittingham LA, Dunn PO. 2007. Brood sex ratios are related to male size but not to attractiveness in the common yellowthroat. Auk, 124, 163-175.

Dale J, Dunn PO, Figuerola J, Lislevand T, Székely T, Whittingham LA. 2007. Sexual selection explains Rensch’s rule of allometry for sexual size dimorphism. Proceedings of the Royal Society of London, B 274, 2971-2979.

Johnson JA, Dunn PO, Bouzat JL. 2007. Effects of recent population bottlenecks on reconstructing the demographic history of prairie-chickens. Molecular Ecology, 16, 2203-2222.

Mitchell DP, Dunn PO, Whittingham LA, Freeman-Gallant CR. 2007. Attractive males provide less parental care in the common yellowthroat. Animal Behaviour, 73, 165-170.

Whittingham LA, Dunn PO, and Lifjeld JT. 2007. Egg mass is related to nestling quality, but there is no differential allocation in tree swallows. Condor, 109, 585-594.

Snyder, H., Stock, P., Kim, S., Flores-Lara, Y. and Forst, S. 2007. New Insights into the Colonization and Release Processes of Xenorhabdus nematophila and the Morphology and Ultrastructure of the Bacterial Receptacle of its Nematode Host, Steinernema carpocapsae. Appl. Environ. Microbiol., 66: 1622-1628

Cheng, D.T., Richards, J, & Helmstetter, F.J. 2007. Activity in the human amygdala corresponds to early, rather than late period autonomic responses to a signal for shock. Learning & Memory, 14,485-490.

Clayton, T. , Chen, J.L., Ernst, M., Richter, L., Cromer, B.A., Morton, C.J., Ng, H., Cook-Kaczorowski, C., Helmstetter, F.J., Furtmuller, R., Ecker, G., Parker, M.W., Sieghart, W. & Cook, J.M. 2007. An updated unified pharmacophore model of the benzodiazepine binding site on γ-aminobutyric acida receptors: Correlation with comparative models. Current Medicinal Chemistry, 14,2755-2775.

Höbel, G., H.C. Gerhardt. 2007. Sources of Selection on Signal Timing in a Tree Frog. Ethology, 113, 973-982.

Höbel, G., J. Schul. 2007. Listening for males and bats: spectral processing in the hearing organ of Neoconocephalus bivocatus (Orthoptera: Tettigoniidae). Journal of Comparative Physiology A, 193, 917-925.

Hutz RJ, Carvan MJ III, Baldridge MG, Conley LK, King Heiden T. 2007. Environmental toxicants and effects on female reproductive function. Trends in Reproductive Biology, Vol. 2:1-11 (also NIH PubMed Central). Online Publication

Baldridge MG, Hutz RJ. 2007. Autoradiographic localization of aromatic hydrocarbon receptor (AHR) in rhesus monkey ovary. Amer J Primatol, 69, 681-691.

Trewin AL, Woller M, Wimpee BA, Conley LK, Baldridge MG, Hutz RJ. 2007. Short-term hormone release from adult female rat hypothalamic and pituitary explants is not altered by 2,3,7,8-tetrachlorodibenzo-p-dioxin. J Reprod Develop, 53, 765-775. Online Publication

Latch EK, JR Heffelfinger, BF Wakeling, J Hanna, D Conrad, and OE Rhodes 2007. Genetic determination of subspecies composition in an unknown Arizona bighorn sheep herd. Proceedings of the Managing Wildlife in the Southwest Symposium, 1-9. Online Publication

Latch EK, KE Mock, and OE Rhodes 2007. The use of molecular markers in wild turkey management. Proceedings of the National Wild Turkey Symposium, 9, 33-44. Online Publication

G, Bruce DC, Challacombe JF, Chertkov O, Detter JC, Gilna P, Han CS, Lucas S, Misra M, Myers GL, Richardson P, Tapia R, Thayer N, Thompson LS, Brettin TS, Henrissat B, Wilson DB, McBride MJ.  2007. Genome sequence of the cellulolytic gliding bacterium Cytophaga hutchinsoniiAppl Environ Microbiol, 73, 3536-3546. Online Publication

Liu J, McBride MJ, Subramaniam S. 2007. Cell-surface filaments of the gliding bacterium Flavobacterium johnsoniae revealed by cryo-electron tomography. J Bacteriol, 189, 7503-7506. Online Publication

Nelson SS, Glocka PP, Agarwal S, Grimm DP, McBride MJ. 2007. Flavobacterium johnsoniae SprA is a cell-surface protein involved in gliding motility. J Bacteriol, 189, 7145-7150. Online Publication

Hull-Sanders, HM, Clare R, Johnson RH, and Meyer, GA. 2007. Evaluation of the Evolution of Increased Competitive Ability (EICA) hypothesis: loss of defense against generalist but not specialist herbivores. Journal of Chemical Ecology, 33, 781-799.

Johnson RH, Hull-Sanders HM and Meyer, GA. 2007. Comparison of foliar terpenes between native and invasive Solidago gigantea. Biochemical Systematics and Ecology, 35, 821-830.

Raicu V. 2007. Efficiency of resonance energy transfer in homo-oligomeric complexes of proteins. Journal of Biological Physics, 33, 109-127. Online Publication

Stoneman MR, Chaturvedi, A, Jansma, DB, Kosempa, M, Zeng, C, Raicu, V. 2007. Protein influence on plasma membrane dielectric properties: in vivo study utilizing dielectric spectroscopy and fluorescence microscopy. Bioelectrochemistry, 70, 542–550. doi:10.1016/j.bioelechem.2006.12.008

Stoneman, MR, Kosempa, M, Gregory, WD, Gregory, CW, Marx, JJ, Mikkelson, W., Tjoe, J., Raicu, V. 2007. Correction of electrode polarization contributions to the dielectric properties of normal and cancerous breast tissues at audio/radio frequencies. Physics in Medicine and Biology, 52, 6589-6604. Online Publication

Hovick, S. M. and J. A. Reinartz. 2007. Restoring forest in wetlands dominated by reed canarygrass: The effects of pre-planting treatments on early survival of planted stock. , 27: 24-39.

Bretschger, O., A. Obraztsova, C. Sturm, I. Chang, Y. Gorby, S. Reed, C. Culley, C. Reardon, S. Barua, M. Romine, J. Zhou, A. Beliaev, R. Bouhenni, D. Saffarini, F. Mansfeld, B. Kim, J. Fredrickson, K. Nealson. 2007. Current Production and Metal Oxide Reduction by Shewanella oneidensis MR-1 Wild Type and Mutants. Appl Environ Microbiol., 73:7003-7012. Online Publication

Dickie IA, Montgomery RA, Reich PB, Schnitzer SA. 2007. Physiological responses of oak seedlings to forest soils. Tree Physiology, 27: 133-140.

Dickie, IA, Schnitzer SA, Reich PB, S.E. Hobbie SE. 2007. Is oak establishment in old fields and savannas context dependent? Journal of Ecology, 95: 309-320.

Mascaro J and Schnitzer SA. 2007. Rhamnus cathartica (common buckthorn) as an ecosystem dominant in Southern Wisconsin forests. Northeastern Naturalist, 14: 387-402.

Strickler, J.R. and G. Balázsi. 2007. Planktonic copepods reacting selectively to hydrodynamic disturbances. Phil. Trans. R. Soc. Lond., B. 362, 1947-1958

Garcia R., F. Moss, A. Nihongi, J.R. Strickler, S. Göller, U. Erdmann, L. Schimansky-Geier and I.M. Sokolov. 2007. Optimal foraging by zooplankton within patches: the case of Daphnia. Math. Biosci., 207, 165-188.

Jersabek, C.D., M.S. Luger, R. Schabetsberger, S. Grill, J.R. Strickler. 2007. Mate and run: Copepod mating versus predation risk in contrasting environments. Oecologia, 153, 761-773.

Jiang, H. and J.R. Strickler. 2007. Copepod flow modes and modulation: A modeling study of the water currents produced by an unsteady swimming copepod. Phil. Trans. R. Soc. Lond., B. 362, 1959-1971

Lovern, S.B., J.R. Strickler and R. Klaper. 2007. Behavioral and Physiological Changes in Daphnia magna when Exposed to Nanoparticle Suspensions (Titanium Dioxide, Nano-C60, and C60HxC70Hx). Environ. Sci. & Technol., 41, 4465-4470.

Peñalva-Arana, D.C., P.A. Moore, B.A. Feinberg, J. DeWall and J.R. Strickler. 2007. Studying Daphnia feeding behavior as a black box: a novel electrochemical approach. Hydrobiologia, 594, 153-163

Uttieri, M., A. Nihongi, M.G. Mazzocchi, J.R. Strickler, and E. Zambianchi. 2007. Pre-copulatory swimming behaviour of Leptodiaptomus ashlandi (Copepoda: Calanoida): a fractal approach. J. Plankton Res., 29, 117-126.

Uttieri, M., D. Cianelli, J.R. Strickler and E. Zambianchi. 2007. On the relationship between fractal dimension and encounters in three-dimensional trajectories. J. Theor. Biol., 247, 480-491.

Weber DN, Connaughton V, Dellinger J, Klemer D, Udvadia A, Carvan MJ 3rd, 2007. Selenomethionine reduces visual deficits due to developmental methylmercury exposures. Physiology and Behavior, 93 (1), p.250-260. Online Publication

Falk SP, Ulijasz AT, Weisblum B. 2007. Differential assay for high-throughput screening of antibacterial compounds. J. Biomol. Screen, 12:1102-8.

Whittingham LA, Dunn PO, and Lifjeld JT. 2007. Egg mass is related to nestling quality, but there is no differential allocation in tree swallows. Condor, 109, 585-594.

Abroe B, Garvin JC, Pedersen MC, Whittingham LA, Dunn PO. 2007. Brood sex ratios are related to male size but not to attractiveness in the common yellowthroat. Auk, 124, 163-175.

Dale J, Dunn PO, Figuerola J, Lislevand T, Székely T, Whittingham LA. 2007. Sexual selection explains Rensch’s rule of allometry for sexual size dimorphism. Proceedings of the Royal Society of London, B 274, 2971-2979.

Dunn PO, Whittingham LA. 2007. Travel costs influence extra-pair mate choice in female tree swallows. Behavioral Ecology and Sociobiology, 61, 449-454.

Mitchell DP, Dunn PO, Whittingham LA, Freeman-Gallant CR. 2007. Attractive males provide less parental care in the common yellowthroat. Animal Behaviour, 73, 165-170.

Ahn, S.-J., C.-H. Yang, and D. A. Cooksey. 2007. Pseudomonas putida 06909 genes expressed during colonization on mycelial surfaces and phenotypic characterization of mutants. J. Appl. Microbiol., 103: 120-132.

Ibekwe, A. M., A.C. Kennedy, J. J. Halvorson, and C.-H. Yang. 2007. Characterization of developing microbial communities in Mount St. Helens pyroclastic substrate. Soil Biol. Biochem., 39:2496-2507.

Ibekwe, A. M., C. M. Grieve, and C.-H. Yang. 2007. Survival of E. coli O157:H7 in soil and on lettuce after soil fumigation. Can. J. Microbiol., 53:623-635.

Wang, Y.; H. Wang, C.-H. Yang, Q. Wang, and R. Mei. 2007. Two distinct manganese-containing superoxide dismutase genes in Bacillus cereus: their physiological characterizations and roles in surviving in wheat rhizosphere. FEMS Microbiol. Lett., 272:206-213.

Yang L., C.-H. Yang, and J. Li. 2007. Influence of extracellular polymeric substances (EPS) on Pseudomonas aeruginosa transport and deposition profiles in porous media. Environ. Sci. Technol., 41:198-205.

Yang, S., Q. Zhang, J. Guo, A. O. Charkowski, B. R. Glick, A. M. Ibekwe, D. A. Cooksey, and C.-H. Yang. 2007. Global effect of Indole-3-acetic acid (IAA) biosynthesis on multiple virulence factors of Erwinia chrysanthemi 3937. Appl. Environ. Microbiol., 73: 1079-1088.

Young EB, Dring MJ, Berges JA. 2007. Intertidal Fucus species show novel patterns of nitrate reductase activity, unaffected by irradiance and ammonium. Journal of Phycology, 43,1200 – 1208.

Young EB, Dring MJ, Savidge G, Birkett DA, Berges JA. 2007. Seasonal variations in nitrate reductase activity and internal N pools in intertidal brown algae are correlated with ambient nitrate concentrations. Plant Cell and Environment, 30, 764-774.

Wijeratne, A, Zhang, W, Sun, Y, Liu, W, Albert, R, Zheng, Z, Oppenheimer, DG, Zhao, D and Ma., H. 2007. Differential gene expression in Arabidopsis wild-type and mutant anthers: insights into anther cell differentiation and regulatory networks. Plant Journal, 52, 14-29. Online Publication

2006

Franklin DJ, Brussaard CPD, Berges JA. 2006. What is the role and nature of programmed cell death in phytoplankton ecology? Eur J Phycol, 41, 1-14.

Kirkpatrick AJ, Gerhardt A, Dick JTA, Laming P, Berges JA. 2006. Suitability of Crangonyx pseudogracilis (Crustacea: Amphipoda) as an early warning indicator in the Multispecies Freshwater Biomonitor. Env Sci Pollut Res, 13, 242-250.

Kirkpatrick AJ, Gerhardt A, Dick JTA, McKenna M, Berges JA. 2006. Use of the multispecies freshwater biomonitor to assess behavioral changes of Corophium volutator (Pallas, 1766) (Crustacea, Amphipoda) in response to toxicant exposure in sediment. Ecotoxicol Environ Saf, 64, 298-303.

Consi, T.R., Barske, G., Bootsma, H., Hansen, T., Janssen, J., Kipp, J., Klump, B., Paddock, R., Szmania, D., Waples, J.T. 2006. GLUCOS: The Great Lakes Urban Coastal Observing System Proceedings of the MTS/IEEE Oceans 2006 Conference, Boston, MA, Sept. 18-21, 2006.

Hecky, R.E., Bootsma, H.A., Odada, E.O. 2006. African lake management initiatives: the global connection. Lakes and Reservoirs: Research and Management, 11(4), 203-213.

Tomlinson, L.M., Higgins, S.N., Malkin, S.Y., Howell, E.T., Bootsma, H.A., Auer, M.T. 2006. Great Lakes water quality agreement annex III technical sub-group, report of the Cladophora modeling team. Submitted to the International Joint Commission., 22 pages

Cheng Y-Q. 2006. Deciphering the biosynthetic codes for the potent anti-SARS-CoV cyclodepsipeptide valinomycin in Streptomyces tsusimaensis ATCC 15141. ChemBioChem, 7, 471-477.

Shen B, Cheng Y-Q and Tang G-L. 2006. Discrete acyltransferases associated with type I polyketide synthases and methods of use. US Patent, No. 7,452,693.

Tang G-L, Cheng Y-Q and Shen B. 2006. Polyketide chain skipping mechanism in the biosynthesis of the hybrid nonribosomal peptide-polyketide antitumor antibiotic leinamycin in Streptomyces atroolivaceus S-140. Journal of Natural Products, 69, 387-393.

Garvin JC, Abroe B, Pedersen MC, Dunn PO, Whittingham LA. 2006. Immune response of nestling warblers varies with extra-pair paternity and temperature. Molecular Ecology, 15, 3833-3840.

Johnson J, Dunn PO. 2006. Low Genetic Variation in the Heath Hen Prior to Extinction and Implications for the Conservation of Prairie-Chicken Populations. Conservation Genetics, 7, 37-48.

Pedersen MC, Dunn PO, Whittingham LA. 2006. Extra-territorial forays are related to a male ornamental trait in the common yellowthroat. Animal Behaviour, 72, 479-486.

Whittingham LA, Dunn PO, Stapleton MK. 2006. Repeatability of extra-pair mating in tree swallows. Molecular Ecology, 15, 841-849.

Forst, S. and Goodner, B. 2006. Comparative bacterial genomics and its use in undergraduate education. Biological Control, 38: 47-53.

Goetsch, M., Owen, H., Goldman, B. and Forst S. 2006. Analysis of the PixA inclusion body protein of Xenorhabdus nematophila. J Bacteriol., 188: 2706-10

Park, D. and Forst, S. 2006. Co-regulation of motility, exoenzyme and antibiotic production by the EnvZ-OmpR-FlhDC-FliA pathway in Xenorhabdus nematophila Mol Microbiol., 61:1397-412.

Cheng, D.T., Knight, D.C., Smith, C.N. & Helmstetter, F.J. 2006. Human amygdala activity during the expression of fear responses. Behavioral Neuroscience, 120,1187-1195.

Parsons, R.G. , Gafford, G.M., Baruch, D.E., Riedner, B.A. & Helmstetter, F.J. 2006. Long term stability of fear memory depends on the synthesis of protein but not mRNA in the amygdala. European Journal of Neuroscience, 23, 1853-1859.

Parsons, R.G., Riedner, B.A., Gafford, G.M. & Helmstetter, F.J. 2006. The Formation of auditory fear memory requires the synthesis of protein and mRNA in the auditory thalamus. Neuroscience, 141,1163-1170.

Parsons, R.G., Gafford, G.M. & Helmstetter, F.J. 2006. Translational control via the mammalian target of rapamycin pathway is critical for the formation and stability of long-term fear memory in amygdala neurons. Journal of Neuroscience, 26,12977-12983.

Robillard, T., G. Höbel, H. C. Gerhardt. 2006. Evolution of advertisement signals in North American hylid frogs: Vocalizations as end-products of calling behavior. Cladistics, 22, 533-545.

Hoot, S. B.., W. C. Taylor, and N. S. Napier. 2006. Phylogeny and biogeography of Isoëtes based on nuclear and chloroplast DNA sequence data. Systematic Botany, 31: 449-460. Online Publication

Schuettpelz, E. and S. B. Hoot. 2006. Inferring the root of Isoëtes: Exploring the alternatives in the absence of an acceptable outgroup. Systematic Botany, 31: 258-270. Online Publication

Ho HM, Ohshima K, Watanabe G, Taya K, Strawn EY, Hutz RJ. 2006. TCDD increases inhibin A production by human luteinized granulosa cells in vitro. J Reprod Develop, 52, 523-528 (also NIH PubMed Central). Online Publication

King Heiden T, Carvan MJ III, Hutz RJ. 2006. Inhibition of follicular development, vitellogenesis, and serum 17ß Estradiol concentrations in zebrafish following chronic, sublethal dietary exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin. Toxicol Sci, 90, 490-499. Online Publication

Orlova M., Kanter E., Krakovich D., Kuchin S. 2006. Nitrogen availability and TOR regulate the Snf1 protein kinase in Saccharomyces cerevisiae. Eukaryot. Cell, 5, 1831-1837.

Latch EK and OE Rhodes 2006. Evidence for biases in estimates of genetic structure due to sampling scheme. Animal Conservation, 9, 308-315. Online Publication

Latch EK, G Dharmarajan, JC Glaubitz, and OE Rhodes 2006. Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation. Conservation Genetics, 7: 295-302. Online Publication

Latch EK, LA Harveson, JS King, MD Hobson, and OE Rhodes 2006. Assessing hybridization in wildlife species: A case study of wild turkeys in Texas. Journal of Wildlife Management, 70, 485-492. Online Publication

Latch EK, R Applegate, and OE Rhodes 2006. Genetic composition of wild turkeys in Kansas following decades of translocations. Journal of Wildlife Management, 70, 1698-1703. Online Publication

Alvarez B, Secades P, Prieto M, McBride MJ, Guijarro JA. 2006. A mutation in Flavobacterium psychrophilum tlpB inhibits gliding motility and induces biofilm formation. Appl Environ Microbiol, 72, 4044-4053. Online Publication

Nelson SS, McBride MJ. 2006. Mutations in Flavobacterium johnsoniae secDF result in defects in gliding motility and chitin utilization. J Bacteriol, 188, 348-351. Online Publication

Meyer, DA, R Bleher, IK Kandela, JA Oliver, RM Albrecht. 2006. The development of alternative markers for transmission electron microscopy and correlative transmission electron and light microscopy. Microsc Microanal, 12(Suppl 2):32-33. Online Publication

Goetsch M, Owen H, Goldman B and Forst S. 2006. Analysis of the PixA inclusion body protein of Xenorhabdus nematophila. J Bacteriol, 188,2706-2710. Online Publication

Loh KD, Gyaneshwar P, Papadimitriou EM, Fong R, Kim KS, Zhou Z, Inwood W, Kustu S. 2006. A new pathway for pyrimidine catabolism. Proc. Natl. Acad. Sci., USA, 103, 5114-5119. Online Publication

Quinn CC and Wadsworth WG 2006. Axon Guidance: Ephrins at WRK on the Midline. Current Biology, 16:R954-5. Online Publication

Quinn CC, Pfeil DS, Chen E, Stovall EL, Harden MV, Gavin MK, Forrester WC, Ryder EF, Soto MC, Wadsworth W 2006. UNC-6/netrin and SLT-1/slit guidance cues orient axon outgrowth mediated by MIG-10/RIAM/lamellipodin. Current Biology, 16:845-853. Online Publication

Redell, D., D. Shurilla, H. Guenther, S.R. Craven, J.A. Reinartz, and M. Rowe. 2006. Detecting directional movement at a hibernaculum with an infrared beam-break system. Bat Research News, 47: 71-80.

Rodríguez RL & Cocroft RB. 2006. Divergence in female duetting signals in the Enchenopa binotata species complex of treehoppers (Hemiptera: Membracidae). Ethology, 112, 1231-1238. Online Publication

Rodríguez RL, Ramaswamy K & Cocroft RB. 2006. Evidence that female preferences have shaped male signal evolution in a clade of specialized plant–feeding insects. Proceedings of the Royal Society B, 273, 2585-2593. Online Publication

Marshall, M., A. Beliaev, A. Dohnalkova, D. Kennedy, L. Shi, Z. Wang, M. Boyanov, B. Lai, K. Kemner, J. McLean, S. Reed, D. Culley, V. Bailey, C. Simonson, D. Saffarini, M. Romine, J. Zachara and J. Fredrickson. 2006. c-Type cytochrome-dependent formation of U(IV) nanoparticles by Shewanella oneidensis. PloS Biology, 4:1324-1333. Online Publication

Schnitzer SA, DeWalt SJ, Chave J. 2006. Censusing and measuring lianas: a quantitative comparison of the common methods. Biotropica, 38: 581-591.

Gerwing, JJ, Schnitzer SA, Burnham RJ, Bongers F, Chave J, DeWalt SJ, Ewango CEN, Foster R, Kenfack D, Martinez-Ramos M, Parren MPE, Parthasarathy N, Perez-Salicrup DR, Putz FE, Thomas DW. 2006. A standard protocol for liana censuses. Biotropica, 38: 256-261.

Kurzel, B.P., Schnitzer SA, Carson WP. 2006. Predicting liana crown location from stem diameter in three Panamanian forests. Biotropica, 38: 262-266.

Londré RA and Schnitzer SA. 2006. The distribution of lianas and their change in abundance in temperate forests over the past 45 years. Ecology, 87: 2973-2978.

Hwang, J.S. and J.R. Strickler. 2006. The underwater applications of Scuba and optical technology in zooplankton research within coral reef environments, Ken-Ting, Taiwan. Journal of Ocean and Underwater Technology, Taiwan, 15, 35-38 (in Chinese).

Hwang, J.-S., and J.R. Strickler. 2006. A review of laser optical technology in plankton and benthos research: What’s known and what’s next in research. Journal of Ocean and Underwater Technology, Taiwan, 16, 40-45 (in Chinese).

Waples JT, Benitez-Nelson C, Savoye N, Rutgers van der Loeff M, Baskaran M, Gustafsson Ö. 2006. An introduction to the application and future use of 234Th in aquatic systems. Marine Chemistry, 100, 166-189.

Whittingham LA, Dunn PO, Stapleton MK. 2006. Repeatability of extra-pair mating in tree swallows. Molecular Ecology, 15, 841-849.

Garvin JC, Abroe B, Pedersen MC, Dunn PO, Whittingham LA. 2006. Immune response of nestling warblers varies with extra-pair paternity and temperature. Molecular Ecology, 15, 3833-3840.

Pedersen MC, Dunn PO, Whittingham LA. 2006. Extra-territorial forays are related to a male ornamental trait in the common yellowthroat. Animal Behaviour, 72, 479-486.

Okinaka, Y., N. T. Perna, S. Yang, N. T. Keen, and C.-H. Yang. 2006. Identification of potential virulence genes in Erwinia chrysanthemi 3937: transposon insertion into plant-upregulated genes. J. Gen. Plant Pathology, 72: 360-368.

Peng Q., S. Yang, A. O. Charkowski, M.-N. Yap, D. A. Steeber, N. T. Keen, and C.-H. Yang. 2006. Population behavior analysis of dspE and pelD regulation in Erwinia chrysanthemi 3937. Mol. Plant-Microbe Interact., 19:451-457.

Yap, M.-N., C. Rojas, C.-H., Yang, and A. O. Charkowski. 2006. Harpin mediates cell aggregation in Erwinia chrysanthemi 3937. J. Bacteriol., 188:2280-2284.

Zhao, D, Yang, X, Quan, L, Timofejeva, L, Rigel. N, Makaroff, CA and Ma, H. 2006. ASK1, a SKP1 homolog, is required for nuclear reorganization, presynaptic homolog juxtaposition and the proper distribution of cohesin during meiosis in Arabidopsis. Plant Molecular Biology, 62, 99-110. Online Publication

2005

Bardy SL and Maddock JR. 2005. Polar localization of a soluble MCP of Pseudomonas aeruginosa. J. Bacteriol., 187(22): 7840-7844.

Bardy SL, Ng SYM, Carnegie D and Jarrell KF. 2005. Site-directed mutagenesis analysis of amino acids critical for activity of the type I signal peptidase of the archaeon Methanococcus voltae. J. Bacteriol., 187(3): 118-91.

Voisin S, Houliston RS, Kelly J, Brisson JR, Watson D, Bardy SL, Jarrell KF and Logan SM. 2005. Identification and characterization of the unique N-linked glycan common to the flagellins and S-layer glycoprotein of Methanococcus voltae. J. Biol. Chem., 280(17): 16586-93.

Segovia M, Berges JA. 2005. Effect of inhibitors of protein synthesis and DNA replication on the induction of proteolytic activities, caspase-like activities and cell death in the unicellular chlorophyte Dunaliella tertiolecta. Eur J Phycol, 40, 21-30.

Young EB, Lavery PS, van Elven B, Dring MJ, Berges JA. 2005. Nitrate reductase activity in macroalgae and its vertical distribution in macroalgal epiphytes of seagrasses. Mar Ecol Prog Ser, 288, 103-114.

Bootsma, H.A., Young, E.G., Berges, J.A. (eds.). 2005. Cladophora research and management in the Great Lakes. Proceedings of workshop, December 2004. Special Report No. 2005-01, UWM Great Lakes WATER Institute. Online Publication

Duponchelle, F., Ribbink, A.J., Msukwa, A., Mafuka, J., Mandere, D., Bootsma, H. 2005. Food partitioning within the species-rich benthic fish community of Lake Malawi, East Africa. Can. J. Fish. Aquat. Sci., 62, 1651-1664.

Scott, B.F., Spencer, C., Martin, J.W., Barra, R., Bootsma, H.A., Jones, K.C., Johnston, A.E. Muir, D.C.G. 2005. Comparison of haloacetic acids in the environment of the northern and southern hemispheres. Environ. Sci. Technol., 39, 8664-8670 Online Publication

Vollmer, M.K., Bootsma, H.A., Hecky, R.E., Patterson, G., Halfman, J.D., Edmond, J.M., Eccles, D.H., Weiss, R.F. 2005. Deep-water warming trend in Lake Malawi, East Africa. Limnol. Oceanogr., 50, 727-732.

Shen B, Chen M, Cheng Y-Q, Du L, Edwards DJ, George NP, Huang Y, Oh T, Sanchez C, Tang G-L, Wendt-Pienkowski E and Yi F. 2005. Prerequisites for Combinatorial Biosynthesis: Evolution of Hybrid NRPS-PKS Gene Clusters. In Biocombinatorial Approaches for Drug Finding, The Ernst Schering Research Foundation Workshop 51, Springer-Verlag, Berlin, pp107-126.

Dey, M., Cao, C., Dar, A., Tamura, T., Ozato, K., Sicheri, F., and Dever, T. E. 2005. Mechanistic link between protein kinase PKR catalytic domain dimerization, autophosphorylation and eIF2α phosphorylation. Cell, 122, 901-913.

Dey, M., Trieselmann, B., Locke, E. G., Lu, J., Cao, C., Dar, A., Krishnamurthy, T., Dong, J., Sicheri, F., and Dever, T. E. 2005. PKR and GCN2 kinases and guanine nucleotide exchange factor eukaryotic translation initiation factor eIF2B recognize overlapping surfaces on translation factor eIF2α. Molecular and Cellular Biology, 25, 3063-75.

Dunn PO, Whittingham LA. 2005. Radio tracking female tree swallows prior to egglaying. Journal of Field Ornithology, 76, 259-263.

Nooker JK, Dunn PO, Whittingham LA. 2005. Effects of food abundance, weather and female condition on reproduction in tree swallows. Auk, 122, 1225-1238.

Pitcher T, Dunn PO, Whittingham LA. 2005. Sperm competition and the evolution of testes size in birds. Journal of Evolutionary Biology, 18, 557-567.

Tarof SA, Dunn PO, Whittingham LA. 2005. The role of melanin- and carotenoid-based ornaments in male-male competition and female choice in the common yellowthroat. Proceedings of the Royal Society of London, B 272, 1121-1127.

Torti VM, Dunn PO. 2005. Variable effects of climate change on six species of North American birds. Oecologia, 145, 486-495.

Whittingham LA, Dunn PO, Nooker JK. 2005. Maternal influences on brood sex ratios: An experimental study in tree swallows. Proceedings of the Royal Society of London, B 272, 1775-1780.

Whittingham LA, Dunn PO. 2005. Effects of extra-pair and within-pair reproductive success on the opportunity for selection in birds. Behavioral Ecology, 16, 138-144.

Kim, D-J. and Forst, S. 2005. Xenorhabdus nematophila: Mutualist and Pathogen. ASM News., 71: 174-178.

Kim, D-J.P. and Forst, S. 2005. The OmpR-FlhDC regulatory circuit and flagella regulon in Xenorhabdus spp. In Pruss, B.M and Matsumura, P. (eds): Global Regulatory Networks in Enteric Bacteria. Research Signpost. Kerala, India.,

Binor, E. and Heathcote, R.D. 2005. Activated Notch disrupts the initial patterning of dopaminergic spinal cord neurons. Dev. Neurosci., 27, 306-312. Online Publication

Gafford, G.M., Parsons, R.G. & Helmstetter, F.J. 2005. Effects of post training hippocampal injections of midazolam on fear conditioning. Learning & Memory, 12, 573-578.

Shin, M.S. & Helmstetter, F.J. 2005. Antinociception following application of DAMGO to the basolateral amygdala results from a direct interaction of DAMGO with mu opioid receptors in the amygdala. Brain Research, 1064,56-65.

Höbel, G. 2005. Rana clamitans (Green Frog) and Rana catesbeiana (American Bullfrog). Reproduction. Herpetological Review, 36(4), 439-440.

Höbel, G. 2005. On the Acoustic Communication System of Eleutherodactylus fitzingeri (Anura: Leptodactylidae). Herpetological Review, 36(3), 242-244.

Höbel, G. 2005. Rana palustris and Ambystoma maculatum. Reproductive behavior. Herpetological Review, 36(1), 55-56.

Gerhardt, H. C., G. Höbel. 2005. Mid-frequency suppression in the green treefrog (Hyla cinerea): implications for the evolution of acoustic communication. Journal of Comparative Physiology A, 191, 707-714.

King Heiden T, Hutz RJ, Carvan III MJ. 2005. Accumulation, tissue distribution, and maternal transfer of dietary 2,3,7,8-tetrachlorodibenzo-p-dioxin: impacts on reproductive success of zebrafish. Toxicol Sci, 87, 497-507. Online Publication

Wang T, Huo YJ, Shi FX, Xu RJ, Hutz RJ. 2005. Effects of Intrauterine Growth Retardation on Development of the Gastrointestinal Tract in Neonatal Pigs. Biol Neonate, 88, 66-72.

Latch EK and OE Rhodes 2005. The effects of gene flow and population isolation on the genetic structure of reintroduced wild turkey populations: Are genetic signatures of source populations retained? Conservation Genetics, 6, 981-997. Online Publication

Braun TF, McBride MJ. 2005. Flavobacterium johnsoniae GldJ is a lipoprotein that is required for gliding motility. J Bacteriol, 187, 2628-2637. Online Publication

Braun TF, Khubbar MK, Saffarini DA, McBride MJ. 2005. Flavobacterium johnsoniae gliding motility genes identified by mariner mutagenesis. J Bacteriol, 187, 6943-6952. Online Publication

Meyer GA, Clare R and Weber E. 2005. An experimental test of the Evolution of Increased Competitive Ability Hypothesis in goldenrod, Solidago gigantea. Oecologia, 144, 299-307.

Meyer, DA, JA Oliver, RM Albrecht. 2005. A method for the quadruple labeling of platelet surface epitopes for transmission electron microscopy. Microsc Microanal, 11(Suppl 2):142. Online Publication

Fawley MW, Fawley KP and Owen HA. 2005. Diversity and ecology of small coccoid green algae from Lake Itasca, Minnesota, USA, including Meyerella planktonica, gen. et sp. nov. (Trebouxiophyceae, Chlorophyta). Phycologia, 44,35-48. Online Publication

Gyaneshwar P, Paliy O, McAuliffe J, Jones A, Jordan MI, Kustu S. 2005. Lessons from E. coli genes similarly regulated in response to sulfur or nitrogen limitation. Proc. Natl. Acad. Sci., USA, 102, 3453-3458. Online Publication

Gyaneshwar P, Paliy O, McAuliffe J, Popham DL, Jordan MI, Kustu S. 2005. Sulfur and nitrogen limitation in Escherichia coli K12: specific homeostatic responses. J. Bacteriol., 187,1074-1090. Online Publication

Goh EB, Bledsoe PJ, Chen LL, Gyaneshwar P, Stewart V, Igo MM. 2005. Hierarchical Control of Anaerobic Gene Expression in Escherichia coli K-12: the Nitrate-Responsive NarX-NarL Regulatory System Represses Synthesis of the Fumarate-Responsive DcuS-DcuR Regulatory System. J. Bacteriol., 187, 4890-4899. Online Publication

Rodríguez RL, Schul J, Cocroft RB & Greenfield MD. 2005. The contribution of tympanic transmission to fine temporal signal evaluation in an ultrasonic moth. Journal of Experimental Biology, 208, 4159-4165. Online Publication

Cocroft RB & Rodríguez RL. 2005. The behavioral ecology of insect vibrational communication. BioScience, 55, 323-334. Online Publication

Bouhenni, R., A. Gehrke, and D. Saffarini. 2005. Identification of genes involved in cytochrome c biogenesis in Shewanella oneidensis using a modified mariner transposon. Appl. Environ. Microbiol., 71:4935-3937. Online Publication

Schnitzer, SA, Kuzee M, Bongers F. 2005. Disentangling above-and below-ground competition between lianas and trees in a tropical forest. Journal of Ecology, 93: 1115-1125.

Schnitzer, SA. 2005. A mechanistic explanation for global patterns of liana abundance and distribution. The American Naturalist, 166: 262-276.

Andrade, JL, Meinzer FC, Goldstein G, Schnitzer SA. 2005. Water uptake and transport in lianas and co-occurring trees of a seasonally dry tropical forest. Trees: Structure & Function, 19: 282-289.

Dickie, IA, Schnitzer SA, Reich PB, Hobbie SE. 2005. Spatially disjunct effects of co-occurring competition and facilitation. Ecology Letters, 8: 1191-1200.

Strickler, J.R., A.J. Udvadia, J. Marino, N. Radabaugh, J. Ziarek and A. Nihongi. 2005. Visibility as a factor in the copepod – planktivorous fish relationship. Sci. Mar., 69, 111-124.

Jiang, H. and J.R. Strickler. 2005. Mass density contrast in relation to the feeding currents in calanoid copepods. J. Plankton Res., 27, 1003-1012.

Uttieri, M., E. Zambianchi, J.R. Strickler and M.G. Mazzochhi. 2005. Fractal characterization of three-dimensional zooplankton swimming trajectories. Ecol. Model., 185, 51-63.

Yamazaki, A.K. and J.R. Strickler. 2005. Contribution of Biological Studies to the Understanding and Modeling of Skilled Performance: Some Examples. Lecture Notes in Computer Science, 3684, 124–128.

Swain, R.A. 2005. Brain plasticity. In N.J. Salkind (Ed.), Encyclopedia of human development. Thousand Oaks, CA: Sage Publications.,

Strickler JR, Udvadia AJ, Marino J, Radabaugh N, Ziarek J, and Nihongi A. 2005. Visibility as a Factor in the Copepod - Planktivorous Fish Relationship. Scientia Marina, 69 (Supp. 1) 111-124. Online Publication

Erickson MG, Ulijasz AT, Weisblum B. 2005. Bacterial 2-component signal transduction systems: a fluorescence polarization screen for response regulator-protein binding. J. Biomol. Screen, 10: 270-4.

Waples JT, Paddock R, Janssen J, Lovalvo D, Schulze B, Kaster J, Klump JV. 2005. High resolution bathymetry and lakebed characterization in the nearshore zone of western Lake Michigan. J. Great Lakes Res., 31, 64-74.

Rutgers van der Loeff M., Sarin MM, Baskaran M, Benitez-Nelson C, Buesseler KO, Charette M, Dai M, Gustafsson Ö, Masque P, Morris P, Orlandini K, Rodriguez y Baena A, Savoye N, Schmidt S, Turnewitsch R, Vöge1 I, Waples JT. 2005. An overview of present techniques and methodological advances in analyzing 234Th in aquatic systems. Marine Chemistry, 100, 190-212.

Whittingham LA, Dunn PO, Nooker JK. 2005. Maternal influences on brood sex ratios: An experimental study in tree swallows. Proceedings of the Royal Society of London, B 272, 1775-1780.

Whittingham LA, Dunn PO. 2005. Effects of extra-pair and within-pair reproductive success on the opportunity for selection in birds. Behavioral Ecology, 16, 138-144.

Dunn PO, Whittingham LA. 2005. Radio tracking female Tree Swallows prior to egglaying. Journal of Field Ornithology, 76, 259-263.

Nooker JK, Dunn PO, Whittingham LA. 2005. Effects of food abundance, weather and female condition on reproduction in tree swallows. Auk, 122, 1225-1238.

Pitcher T, Dunn PO, Whittingham LA. 2005. Sperm competition and the evolution of testes size in birds. Journal of Evolutionary Biology, 18, 557-567.

Sheldon FH, Whittingham LA, Moyle RG, Slikas B, Winkler DW. 2005. Phylogeny of Swallows (Aves: Hirundinidae) estimated from nuclear and mitochondrial DNA sequences. Molecular Phylogenetics and Evolution, 35, 254-270.

Tarof SA, Dunn PO, Whittingham LA. 2005. The role of melanin- and carotenoid-based ornaments in male-male competition and female choice in the common yellowthroat. Proceedings of the Royal Society of London, B 272, 1121-1127.

Keyser MR and Witten JL 2005. Calcium-Activated Potassium Channel of the Tobacco Hornworm Manduca sexta: Molecular Characterization and Expression Analysis. J. Exp. Biol., 208: 4167-4179. Online Publication

Kawai T., C.-H. Yang, M. R. Matsumoto, D. E. Crowley, and J. D. Sheppard. 2005. Comparison of PCR-DGGE and selective plating methods for monitoring the dynamics of a mixed culture population in synthetic brewery wastewater. Biotechnol. Prog., 21:712–719.

Yang, L., Y.-H. Zhaoa, B.-X. Zhang, C.-H. Yang, and X. Zhang. 2005. Isolation and characterization of a chlorpyrifos and 3,5,6-trichloro-2-pyridionol degrading bacterium. FEMS Microbiol. Lett., 251:67-73.

Yap, M.-N., C.-H. Yang, J. D. Barak, and A. O. Charkowski. 2005. The Erwinia chrysanthemi type III secretion system is required for multicellular behavior. J. Bacteriol., 187:639-648.

Young E, van Elven B, Lavery P, Berges J and Dring M. 2005. Inorganic nitrogen profiles in seagrass meadows and spatial patterns of nitrate reductase activity in macroalgal epiphytes. Marine Ecology Progress Series, 288, 103-114.

Young EB, Beardall J. 2005. Modulation of photosynthesis and inorganic carbon acquisition in a marine microalga by nitrogen, iron and light availability. Canadian Journal of Botany, 83, 917-928.

Young EB, Lavery PS, Van Elven B, Dring MJ and Berges JA. 2005. Dissolved inorganic nitrogen profiles and spatial distribution of nitrate reductase activity in macroalgal epiphytes within seagrass meadows. Marine Ecology Progress Series, 288: 103-114.

Bootsma, H.A., Young, E.B., Berges, J.A. 2005. Cladophora research and management in the Great Lakes. Proceedings of workshop, December 2004., Special Report No. 2005-01, UWM Great Lakes WATER Institute.

Wang, Z, Liang, Y, Li, C, Xu, Y, Lan, L, Zhao, D, Chen, C, Xu, Z, Xue, Y and Chong, K. 2005. Microarray analysis of genes involved in anther development in rice (Oryza sativa L.). Plant Molecular Biology, 58, 721-737. Online Publication

2004

Bardy SL, Ng SYM, and Jarrell KF. 2004. Recent advances in the structure and assembly of the archaeal flagellum. J. Mol. Microbiol. Biotechnol., 7: 41-51.

Berges JA, Franklin DJ, Harrison PJ. 2004. Evolution of an artificial seawater medium: Improvements in enriched seawater, artificial water over the last two decades. J Phycol, 40, 619-619.

Berges JA, Gibson CE, Stewart BM. 2004. Physiological responses of phytoplankton communities in the Irish Sea to simulated upwelling. Hydrobiologia, 517, 121-132.

Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou SG, Allen AE, Apt KE, Bechner M, Brzezinski MA, Chaal BK, Chiovitti A, Davis AK, Demarest MS, Detter JC, Glavina T, Goodstein D, Hadi MZ, Hellsten U, Hildebrand M, Jenkins BD, Jurka J, Kapitonov VV, Kroger N, Lau WWY, Lane TW, Larimer FW, Lippmeier JC, Lucas S, Medina M, Montsant A, Obornik M, Parker MS, Palenik B, Pazour GJ, Richardson PM, Rynearson TA, Saito MA, Schwartz DC, Thamatrakoln K, Valentin K, Vardi A, Wilkerson FP, Rokhsar DS. 2004. The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism. Science, 306, 79-86.

Franklin DJ, Berges JA. 2004. Mortality in cultures of the dinoflagellate Amphidinium carterae during culture senescence and darkness. Proc R Soc Lond, B, 271, 2099-2107.

Franklin DJ, Hoegh-Guldberg P, Jones RJ, Berges JA. 2004. Cell death and degeneration in the symbiotic dinoflagellates of the coral Stylophora pistillata during bleaching. Mar Ecol Prog Ser, 272, 117-130.

Montagnes DJS, Berges JA. 2004. Determining parameters of the numerical response. Microb Ecol, 48, 139-144.

Tomas J, Geffen AJ, Allen IS, Berges JA. 2004. Analysis of the soluble matrix of vaterite otoliths of juvenile herring (Clupea harengus): do crystalline otoliths have less protein? Comp Biochem Physiol A Comp Physiol, 139, 301-308.

Wilson S, Blake C, Berges JA, Maggs CA. 2004. Environmental tolerances of free-living coralline algae (maerl): implications for European marine conservation. Biol. Conservation, 120, 283-293.

Bootsma, H.A., Jorgensen, S.E. 2004. Lake Malawi / Nyasa In Nakamura, M. (ed.), Managing Lake Basins; Practical Approaches for Sustainable Use., International Lake Environment Committee (ILEC). 36pp. Online Publication

Tang G-L, Cheng Y-Q and Shen B. 2004. The biosynthetic gene cluster of the antitumor antibiotic leinamycin from Streptomyces atroolivaceus S-140 revealing unprecedented architectural complexity for a hybrid polyketide synthase and nonribosomal peptide synthetase. Chemistry & Biology, 11, 33-45.

J. R. Coggins. 2004. Helminth community structure of sympatric eastern American toad, Bufo americanus americanus, northern leopard frog, Rana pipiens, and blue-spotted salamander, Ambystoma laterale, from southeastern Wisconsin. Journal of Parasitology, 89(4): 673-680.

Dunn PO. 2004. Breeding dates and reproductive performance. , In: Birds and Climate Change (eds. Møller AP, Fiedler W, Berthold P), pp. 67-85. Elsevier Ltd, San Diego, CA.

Johnson JA, Bellinger R, Toepfer J, Dunn PO. 2004. Temporal changes in allele frequencies and low effective population size in greater prairie-chickens. Molecular Ecology, 13, 2617-2630.

Poirier NE, Whittingham LA, Dunn PO. 2004. Males achieve greater reproductive success through multiple broods than through extra-pair mating in house wrens. Animal Behaviour, 67, 1109-1116.

He, H., Holly A. Snyder, and Steven Forst. 2004. Unique organization and regulation of the mrx fimbrial operon in Xenorhabdus nematophila. Microbiology, 150: 1439-1446.

Baruch, D.E., Swain, R.A. & Helmstetter, F.J. 2004. Effects of exercise on Pavlovian fear conditioning. Behavioral Neuroscience, 118, 1123-1127.

Knight, D.C., Cheng, D.T., Smith, C.N., Stein, E.A. & Helmstetter, F.J. 2004. Neural substrates mediating human delay and trace fear conditioning. Journal of Neuroscience, 24,218-228.

Knight, D.C., Smith, C.N., Cheng, D.T., Stein, E.A. & Helmstetter, F.J. 2004. Learning-related patterns of brain activation revealed using fMRI during acquisition and extinction of Pavlovian conditioned fear. Cognitive, Affective and Behavioral Neuroscience, 4, 317-325.

Hoot, S. B.., N. S. Napier, and W. C. Taylor. 2004. Revealing unknown or extinct lineages within Isoëtes (Isoëtaceae) using DNA sequences from hybrids. American Journal of Botany, 91: 899-904. Online Publication

Schuettpelz, E. and S. B. Hoot. 2004. Phylogeny and biogeography of Caltha (Ranunculaceae) based on chloroplast and nuclear DNA sequences. American Journal of Botany, 91: 247 253. Online Publication

Baldridge MG, Gerstenberger SL, Tripoli V, Stahl R, Hutz RJ. 2004. Modulation of ovarian follicle maturation in Long-Evans rats exposed to ammonium perchlorate in utero and lactationally. Reprod Toxicol, 19, 155-161.

Mock KE, EK Latch, and OE Rhodes 2004. Assessing losses of genetic diversity due to translocation: long-term case histories in the Merriam's turkey. Conservation Genetics, 5, 631-645. Online Publication

McBride MJ, Braun TF. 2004. GldI is a lipoprotein that is required for Flavobacterium johnsoniae gliding motility and chitin utilization. J Bacteriol, 186, 2295-2302. Online Publication

McBride MJ. 2004. Cytophaga-Flavobacterium gliding motility. J Mol Microbiol Biotechnol, 7, 63-71.

Alvarez B, Secades P, McBride MJ, Guijarro JA. 2004. Development of genetic techniques for the psychrotrophic fish pathogen Flavobacterium psychrophilum. Appl Environ Microbiol, 70, 581-587. Online Publication

Weise CM, Meyer GA and O'Brien H. 2004. A long-term survey of the breeding birds of the Cedarburg Bog and Cedarburg Beech Woods State Natural Areas. Passenger Pigeon, 66, 101-112.

Allen, GA, AS Wolberg, JA Oliver, M Hoffman, HR Roberts, and DM Monroe. 2004. Impact of procoagulant concentration on rate, peak, and total thrombin generation in a model system. J Thromb Haemost, 2:402-413. Online Publication

Haas, KM, FR Toapanta, JA Oliver, JC Poe, JH Weis, DR Karp, JF Bower, TM Ross, and TF Tedder. 2004. Cutting edge: C3d functions as a molecular adjuvant in the absence of CD21/35 expression J Immunol, 172:5833-5837. Online Publication

Uchida, J, Y Hamaguchi, JA Oliver, JV Ravetch, JC Poe, KM Haas, and TF Tedder. 2004. The innate mononuclear phagocyte network depletes B lymphocytes through Fc receptor-dependent mechanisms during anti-CD20 antibody immunotherapy. J Exp Med, 199:1659-1669. Online Publication

Uchida, J, Y Lee, M Hasegawa, Y Liang, A Bradney, JA Oliver, K Bowen, DA Steeber, KM Haas, JC Poe, and TF Tedder. 2004. Mouse CD20 expression and function. Int Immunol, 16:119-129. Online Publication

Cristobal R, Edmiston CE, Runge-Samuelson CL, Owen HA, Firszt JB and Wackym PA. 2004. Fungal biofilm formation on cochlear implant hardware after antibiotic-induced fungal overgrowth within the middle ear. Pediatr Infect Dis J, 23,774-778. Online Publication

Loyd L, Jones S, Jovanovic G, Gyaneshwar P, Rolfe M, Thompson A, Buck M. 2004. Identification of a new member of the phage shock protein response in Escherichia coli, the phage shock protein G (PspG). J. Biol. Chem., 279, 55707-55714. Online Publication

Zimmer D, Paliy O, Thomas B, Gyaneshwar P, Kustu S. 2004. Genome image programs: visualization and interpretation of Escherichia coli microarray experiments. Genetics, 167: 2111-2119. Online Publication

Rodríguez RL & Snedden WA. 2004. On the functional design of receiver bias and mate choice. Animal Behaviour, 68, 427-432. Online Publication

Rodríguez RL & Greenfield MD. 2004. Behavioural context regulates dual function of ultrasonic hearing in lesser waxmoths: bat avoidance and pair formation. Physiological Entomology, 29, 159-168. Online Publication

Rodríguez RL, Sullivan LE & Cocroft RB. 2004. Vibrational communication and reproductive isolation in the Enchenopa binotata species complex of treehoppers (Hemiptera: Membracidae). Evolution, 58, 571-578. Online Publication

Greenfield MD & Rodríguez RL. 2004. Genotype-environment interaction and the reliability of mating signals. Animal Behaviour, 68, 1461-1468. Online Publication

Schnitzer SA, Parren MPE, Bongers F. 2004. Recruitment of lianas into logging gaps and the effects of pre-harvest liana cutting in a Cameroon lowland forest. Forest Ecology & Management, 190:87-98.

Holmgren M. and Schnitzer SA. 2004. Science on the rise in developing countries. PloS Biology, 2: 10-13.

Mascaro J, Schnitzer SA, Carson WP. 2004. Liana diversity, abundance, and mortality in a tropical wet forest in Costa Rica. Forest Ecology and Management, 190: 3-15.

Pérez-Salicrup DR, Schnitzer SA, Putz FE, Guest Editors. 2004. Community ecology and management of lianas. Forest Ecology and Management, 190: 1-2.

Stevens MHH, Bunker D,Schnitzer SA, Carson WP. 2004. Establishment limitation reduces species recruitment along an experimental fertility gradient. Journal of Ecology, 92: 339-347.

Strickler, J.R., J.-S. Hwang, E. Malkiel, J. Katz, and A. Arnodin. 2004. Observing Zooplankters in situ using Optical Signal Processors. J. Sea Technology (Taiwan), 13 (4), 31-44 (in Chinese).

Nihongi, A., S. Lovern and J.R. Strickler. 2004. Mate-searching behaviors in the freshwater calanoid copepod Leptodiaptomus ashlandi. J. Mar. Systems, 49, 65-74.

Seuront, L., F.G. Schmitt, M.C. Brewer, J.R. Strickler and S. Soussi. 2004. From Random Walk to Multifractal Random Walk in Zooplankton Swimming Behavior. Zool. Stud., 43, 498-510.

Uttieri, M., M.G. Mazzocchi, A. Nihongi, M. Ribera d’Alcalà, J.R. Strickler and E. Zambianchi 2004. Lagrangian description of zooplankton swimming trajectories. J. Plankton Res., 26, 99-105.

Yamazaki, A.K. and J.R. Strickler. 2004. Illustrating Affordance and Skilled Performance Using Results from Plankton Behavior Studies. Japan. Soc. Artificial Intel., 2p.

Baruch, D.E., Swain, R.A., & Helmstetter, F.J. 2004. Effects of exercise on Pavlovian fear conditioning. Behavioral Neuroscience, 118, 1123-1127.

Linney, E., and Udvadia, A. J. 2004. Construction and detection of fluorescent germ-line transgenic zebrafish. In "Methods in Molecular Biology" (H. Schatten, Ed.), Vol. 254, Germ Cell Protocols: Molecular Embryo Analysis, Live Imaging, Transgenesis, and Cloning, pp. 271-288., Humana Press Inc., Totowa, NJ.

Ulijasz AT, Andes DR, Glasner JD, Weisblum B. 2004. Regulation of iron transport in Streptococcus pneumoniae by RitR, an orphan response regulator. J. Bacteriol, 186: 8123-36.

Waples JT, Orlandini KA, Edgington DN, Klump JV. 2004. Seasonal and spatial dynamics of 234Th/238U disequilibria in southern Lake Michigan. Journal of Geophysical Research, 109, C10S06, doi:10.1029/2003JC002204.

Brylawski AMZ, Whittingham LA. 2004. An experimental study of mate guarding and paternity in house wrens. Animal Behaviour, 68, 1417-1424.

Poirier NE, Whittingham LA, Dunn PO. 2004. Males achieve greater reproductive success through multiple broods than through extra-pair mating in house wrens. Animal Behaviour, 67, 1109-1116.

Ibekwe, A. M., S. K. Papiernik, C.-H. Yang. 2004. Enrichment and molecular characterization of chloropicrin- and metam-sodium-degrading microbial communities. Appl. Microbiol. Biotechnol., 66:325-332.

Marschner, P., D. Crowley and C.-H. Yang. 2004. Development of specific rhizosphere bacterial communities in relation to plant species, nutrition and soil type. Plant and Soil., 261: 199-208.

Yang, S., N. T. Perna, D. A. Cooksey, Y. Okinaka, S. E. Lindow, A. M. Ibekwe, N. T. Keen, and C.-H Yang. 2004. Genome-wide identification of plant-upregulated genes of Erwinia chrysanthemi 3937 using a GFP-based IVET leaf array. Mol. Plant-Microbe Interact., 17:999-1008. Online Publication

Young E, Bootsma H and Berges J. 2004. Can Activity of Enzymes Involved in Nutrient Assimilation be Useful as Indices of Nutrient Status in Cladophora? ‘Cladophora Research and Management in the Great Lakes’ A Workshop at the Great Lakes WATER Institute, UWM, Dec 8, 2004., Online Publication

Bootsma H, Young EB and Berges JA. 2004. Temporal and spatial patterns of Cladophora biomass and nutrient stoichiometry in Lake Michigan. ‘Cladophora Research and Management in the Great Lakes’ A Workshop at the Great Lakes WATER Institute, UWM, Dec 8, 2004., Online Publication

Ni, W, Xie, D, Hobbie, L, Feng, B, Zhao, D, Akkara, J and Ma, H. 2004. Regulation of flower development in Arabidopsis by SCF complex. Plant Physiology, 134, 1574-1585. Online Publication

2003

Bardy SL and Jarrell KF. 2003. Cleavage of preflagellins by an aspartic acid signal peptidase is essential for flagellation in the archaeon Methanococcus voltae. Mol. Microbiol., 50(4): 1339-47.

Bardy SL, Eichler J, and Jarrell KF. 2003. Archaeal signal peptides – a comparitive survey at the genome level. Protein Sci., 12(9):1833-43.

Sparks TH, Crick HQP, Dunn PO, Sokolov LV. 2003. Phenology of selected lifeforms: Birds. , In: Phenology: An integrative environmental science (ed. Schwartz MD), pp. 421-436. Kluwer, Amsterdam.

Kim, D-J. Boylan, B. George, N. and Forst, S. 2003. Inactivation of ompR Promotes Precocious Swarming and flhDC Expression in Xenorhabdus nematophila. J. Bacteriol., 185 5290-5294.

Moghadam, K.S., Chen, A and Heathcote, R.D. 2003. Establishment of a ventral cell fate in the spinal cord. Dev. Dyn., 227, 552-562. Online Publication

Kuchin S., Carlson M. 2003. Analysis of transcriptional repression by Mig1 in Saccharomyces cerevisiae using a reporter assay. Methods Enzymol, 371, 604-616.

Kuchin S., Vyas V.K., Carlson M. 2003. Role of the yeast Snf1 protein kinase in invasive growth. Biochem. Soc. Trans., 31, 175-177.

Kuchin S., Vyas V.K., Kanter E., Hong S.-P., Carlson M. 2003. Std1p (Msn3p) positively regulates the Snf1 kinase in Saccharomyces cerevisiae. Genetics, 163, 507-514.

Vyas V.K., Kuchin S., Berkey C., Carlson M. 2003. Snf1 kinases with different beta-subunit isoforms play distinct roles in regulating haploid invasive growth. Mol. Cell. Biol., 23, 1341-1348.

Quinn CC, Chen E, Kinjo TG, Kelly G, Bell AW, Elliott RC, McPherson PS, Hockfield S 2003. TUC-4b, a novel TUC family variant, regulates neurite outgrowth and associates with vesicles in the growth cone. Journal of Neuroscience, 23:2815-2823. Online Publication

Saffarini, D. R. Schultz and A. Beliaev. 2003. Involvement of cyclic AMP (cAMP) and CAMP receptor protein in anaerobic respiration of Shewanella oneidensis. J. Bacteriol., 185:3668-3671. Online Publication

Ava J. Udvadia and Elwood Linney 2003. Windows into Development: Historic, Current and Future Perspectives on Transgenic Zebrafish. Developmental Biology, 256: 1-17.

Smith EA, Erickson MG, Ulijasz AT, Weisblum B, and Corn RM. 2003. Surface plasmon resonance imaging of transcription factor proteins: Interactions of bacterial response regulators with DNA arrays on gold films. Langmuir, 9: 1486-92.

Keyser MR, Anson BD, Titus SA, Ganetzky B, and Witten JL 2003. Molecular Characterization, Functional Expression, and Developmental Profile of an Ether à go-go K+ Channel in the Tobacco Hornworm Manduca sexta. J. Neurobiol, 55: 73-84. Online Publication

2002

Bardy SL, and Jarrell KF. 2002. FlaK of the archaeon Methanococcus maripaludis possesses preflagellin peptidase activity. FEMS Microbiol. Lett., 208(1): 53-59.

Bardy SL, Mori T, Komoriya K, Aizawa SI, and Jarrell KF. 2002. Identification and localization of the flagellins FlaA and FlaB3 of Methanococcus voltae. J. Bacteriol., 184(19): 52223-33.

Bardy SL, Ng SY, and Jarrell KF. 2002. Prokaryotic motility structures. Microbiology., 149: 295-304.

Brantner, C.A., C. C. Remsen, H. A. Owen, L. A.Buchholz, and M. L. P. Collins. 2002. Intracellular localization of the particulate methane monooxygenase and methanol dehydrogenase in Methylomicrobium album BG8. Arch. Microbiol., 178: 59-64. Online Publication

Forst, S. and Boylan, B. 2002. Characterization of the pleiotropic phenotype of an ompR strain of Xenorhabdus nematophila. Antonie van Leeuwenhoek, 81: 43-49.

Forst, S. and Clarke, D. 2002. Bacteria-nematode symbioses. n Gaugler (ed.), Entomopathogenic Nematology CABI Publishing, Wallingford, UK.,

P. Prohinar, S. A. Forst, D. Reed, I. Mandic-Mulec & J. Weiss. 2002. OmpR-dependent and OmpR-independent responses of Escherichia coli to sublethal attack by the neutrophil bactericidal/permeability increasing protein. Molecular Microbiology, 43: 1493-1500.

Kuchin S., Vyas V.K., Carlson M. 2002. Snf1 protein kinase and the repressors Nrg1 and Nrg2 regulate FLO11 expression, haploid invasive growth, and diploid pseudohyphal differentiation. Mol. Cell. Biol., 22, 3994-4000.

Latch EK, EJ Smith, and OE Rhodes 2002. Isolation and characterization of microsatellite loci in wild and domestic turkeys. Molecular Ecology Notes, 2, 176-178. Online Publication

JA Oliver, DM Monroe, FC Church, H. Roberts, and M Hoffman. 2002. Activated protein C cleaves factor Va more efficiently on endothelium than on platelet surfaces. Blood, 100:539-546. Online Publication

Benvenuti S, Cramer R, Quinn CC, Bruce J, Zvelebil M, Corless S, Bond J, Yang A, Hockfield S, Burlingame AL, Waterfield MD, Jat PS 2002. Differential proteome analysis of replicative senescence in rat embryo fibroblasts. Mol. Cell. Proteomics., 1:280-292. Online Publication

Saffarini, D., S. Blumerman, and K. Mansoorabadi. 2002. Role of menaquinones in Fe(III) reduction by membrane fractions of Shewanella putrefaciens. J. Bacteriol., 184:846-848. Online Publication

Lu D, Lee K-Y, Horodyski FM, and Witten JL 2002. Molecular characterization and cell-specific expression of a Manduca sexta FLRFamide gene. J. Comp. Neurol., 446: 377-396. Online Publication

2001

Dey, M., and Choudhury, S. 2001. Genetically modified organism – A Brave New World! Current Sc., 80, 722-723.

Delihas N. and Forst S. 2001. MicF: An Antisense RNA Gene Involved in Response of Escherichia coli to Global Stress Factors. Journal of Molecular Biology, 313 (1):1-12.

Kim, D-J and Forst, S. 2001. Genomic analysis of the histidine kinase family in bacteria and archaea. Microbiology, 147: 1197-1212.

Binor, E., and Heathcote, R.D. 2001. Development of GABA-immunoreactive neuron patterning in the spinal cord. J. Comp. Neurol., 438, 1-11. Online Publication

Walsh, B. M. and S. B. Hoot. 2001. Phylogenetic relationships of Capsicum (Solanaceae) using DNA sequences from two noncoding regions: The chloroplast atpB-rbcL spacer region and nuclear waxy introns. International Journal of Plant Sciences, 162: 1409-1418. Online Publication

Vincent O., Kuchin S., Hong S.P., Townley R., Vyas V.K., Carlson M. 2001. Interaction of the Srb10 kinase with Sip4, a transcriptional activator of gluconeogenic genes in Saccharomyces cerevisiae. Mol. Cell. Biol., 21, 5790-5796.

Vincent O., Townley R., Kuchin S., Carlson M. 2001. Subcellular localization of the Snf1 kinase is regulated by specific beta-subunits and a novel glucose signaling mechanism. Genes Dev., 15, 1104-1114.

Vyas V.K., Kuchin S., Carlson M. 2001. Interaction of the repressors Nrg1 and Nrg2 with the Snf1 kinase in Saccharomyces cerevisiae. Genetics, 158, 563-572.

Hussain NK, Jenna S, Glogauer M, Quinn CC, Wasiak S, Guipponi M, Antonarakis SE, Kay BK, Stossel TP, Lamarche-Vane N, McPherson PS 2001. ) Endocytic protein intersectin-l regulates actin assembly via Cdc42 and N-WASP. Nature Cell Biology, 10:927-932. Online Publication

Wasiak S, Quinn CC, Ritter B, de Heuvel E, Baranes D, Plomann M, McPherson PS 2001. The Ras/Rac guanine nucleotide exchange factor mammalian Son-of-sevenless interacts with PACSIN1/syndapin I, a regulator of endocytosis and the actin cytoskeleton. Journal of Biological Chemistry, 276:26622-26628. Online Publication

Beliaev, A., Saffarini, D., McLaughlin, J. and Hunnicutt, D. 2001. MtrC, an outer membrane decaheme c cytochrome required for metal reduction in Shewanella putrefaciens MR-1. Molecular Microbiology., 39:722-730. Online Publication

Ava J. Udvadia, Reinhard W. Köster, and J. H. Pate Skene 2001. GAP-43 Promoter Elements in Transgenic Zebrafish Reveal a Difference in Signals for Axon Growth During CNS Development and Regeneration. Development, 128: 1175-1182.

2000

Cheng, Y.-Q. and J.D. Walton* 2000. A eukaryotic alanine racemase gene involved in cyclic peptide biosynthesis. Journal of Biological Chemistry, 275:4906-4911. Online Publication

Cheng, Y. S., C. A. Brantner, A. Tsapin, and M. L. P. Collins. 2000. Role of the H protein in assembly of the photochemical reaction center and intracytoplasmic membrane in Rhodospirillum rubrum. J. Bacteriol., 182: 1200-1207. Online Publication

Dey, M., and Guha-Mukherjee, S. 2000. Aspartate metabolism in Cicer immature seeds requires Ca2+, protein phosphorylation and dephosphorylation. Plant Science, 150, 85-91.

Volgyi, A, Fordor, A and Forst, S. 2000. Inactivation of a novel gene produces a phenotypic variant cell and affects symbiotic behavior in Xenorhabdus nematophilus. Appl. Environ. Microbiol., 66: 1622-1628.

Heathcote, R.D. , Ekman, J.M., Campbell, K.P., and Godfrey, E.W. 2000. Dystroglycan overexpression in vivo alters acetylcholine receptor aggregation at the neuromuscular junction. Devl. Biol., 227, 595-605. Online Publication

Godfrey, E.W., Roe, J., and Heathcote, R.D. 2000. Agrin fragments differentially induce ectopic aggregation of acetylcholine receptors in myotomal muscles of Xenopus embryos. J. Neurobiol., 44, 436-445. Online Publication

Kuchin S., Treich I., Carlson M. 2000. A regulatory shortcut between the Snf1 protein kinase and RNA polymerase II holoenzyme. Proc. Natl. Acad. Sci. USA, 97, 7916-7920.

Tong XK, Hussain NK, de Heuvel E, Kurakin A, Abi-Jaoude E, Quinn CC, Olson MF, Marais R, Baranes D, Kay BK, McPherson PS. 2000. The endocytic protein intersectin is a major binding partner for the Ras exchange factor mSos1 in rat brain. EMBO Journal, 19: 1263-1271. Online Publication

Ulijasz AT, Kay BK, Weisblum B. 2000. Peptide analogues of the VanS catalytic center inhibit VanR binding to its cognate promoter. Biochemistry, 39: 11417-24.

1999

Dey, M., and Guha-Mukherjee, S. 1999. Phytochrome activation of aspartate kinase in etiolated chickpea (Cicer arietinum) seedling. Journal of Plant Physiology, 154, 454-458.

Chen, A., Ekman, J., and Heathcote, R.D. 1999. Reduction in cell size during development of the spinal cord. J. Comp. Neurol., 409, 592-602. Online Publication

Godfrey, E.W., Roe, J., and Heathcote, R.D. 1999. Overexpression of agrin isoforms in Xenopus embryos alters the distribution of synaptic acetylcholine receptors during development of the neuromuscular junction. Devl. Biol., 205, 22-32. Online Publication

Hoot, S. B.., S. Magallon, and P. R. Crane. 1999. Phylogeny of basal eudicots based on three molecular data sets: atpB, rbcL, and 18S nuclear ribosomal DNA sequences. Annals of the Missouri Botanical Garden, 86: 1-32. Online Publication

JA Oliver, DM Monroe, HR Roberts, and M Hoffman. 1999. Thrombin activates factor XI on activated platelets in the absence of factor XII. Arterioscler Thromb and Vasc Biol, 19:170-177. Online Publication

Chang, J-Y, DM Monroe, JA Oliver, and HR Roberts. 1999. TFPIβ, a second product from the mouse tissue factor pathway inhibitor (TFPI) gene. Thromb Haemost, 81:45-49. Online Publication

Quinn CC, Gray GE, Hockfield S. 1999. A family of proteins implicated in axon guidance and outgrowth. Journal of Neurobiology, 41:158-164. Online Publication

Venkateswaran, K., Moser, D.P., Dollhopf, M.E., Lies, D.P., Saffarini, D.A., MacGregor, B.J., Ringelberg, D.B., White, D.C., Nishijima, M., Sano, H., Burghardt, J. Stackebrandt, E. and Nealson, K.H. 1999. Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov. Int. J. Syst. Bacteriol., 49: 705-724. Online Publication

Ulijasz AT, Weisblum B. 1999. Dissecting the VanRS signal transduction pathway with specific inhibitors. J. Bacteriol, 181: 627-31.

1998

Dey, M., Kalia, S., Ghosh, S., and Guha-Mukherjee, S. 1998. Biochemical and molecular basis of differentiation in plant tissue culture. Current Sc, 74, 591-596.

Kuchin S., Carlson M. 1998. Functional relationships of the Srb10-Srb11 kinase, CTD kinase I and the transcriptional corepressor Ssn6-Tup1. Mol. Cell. Biol., 18, 1163-1171.

Treitel M.A., Kuchin S., Carlson M. 1998. Snf1 protein kinase regulates phosphorylation of the Mig1 repressor in Saccharomyces cerevisiae. Mol. Cell. Biol., 18, 6273-6280.

Chang, J-Y, DM Monroe, JA Oliver, DK Liles, and HR Roberts. 1998. Cloning, expression, and characterization of mouse tissue factor pathway inhibitor (TFPI). Thromb Haemost, 79:306-309. Online Publication

Kjalke, M, DM Monroe, M Hoffman, JA Oliver, M Ezban, U Hedner, and HR Roberts. 1998. The effects of activated factor VII in a cell-based model for tissue factor-initiated coagulation. Blood Coag Fibrinol, 9 (suppl 1):S21-S25. Online Publication

Monroe, DM, M Hoffman, JA Oliver, and HR Roberts. 1998. A possible mechanism of action of activated factor VII independent of tissue factor. Blood Coag Fibrinol, 9 (suppl 1):S15-S20. Online Publication

Roberts, HR, DM Monroe, JA Oliver, J-Y Chang, and M Hoffman. 1998. Newer concepts of blood coagulation. Haemophilia, 4:331-334. Online Publication

Thomas, DW, RB Mannon, PJ Mannon, A Latour, JA Oliver, M Hoffman, O Smithies, BH Koller, and TM Coffman. 1998. Coagulation defects and altered hemodynamic responses in mice lacking receptors for thromboxane A2. J Clin Invest, 102:1994-2001. Online Publication

Beliaev, A. and D. Saffarini. 1998. Shewanella putrefaciens mtrB encodes an outer membrane protein required for Fe(III) and Mn(IV) reduction. J. Bacteriol., 181:6292-6297. Online Publication

Witten JL and Truman JW 1998. The distribution of GABAergic lineages in insects suggest lineage homology. J. Comp. Neurol., 398: 515-528. Online Publication

Miao, YS, Waters, EM, and Witten, JL 1998. Developmental and regional-specific expression of FLRFamide peptides in the tobacco hornworm, Manduca sexta, suggest functions in ecdysis. J. Neurobiol., 37: 468-484. Online Publication

1997

Yuan, H., M. L. P. Collins, and W. E. Antholine. 1997. Low-frequency EPR of the copper in particulate methane monooxygenase from Methylomicrobium albus BG8. J. Amer. Chem Soc., 119: 5073-5074. Online Publication

Heathcote, R.D. 1997. Origin and morphogenesis of neurons in the frog cardiac ganglion. Kaohsiung J. Med. Sci., 13, 36-41. Online Publication

Hudetz AG, JA Oliver, JD Wood, PJ Newman, and JP Kampine. 1997. Leukocyte adhesion in pial cerebral venules after PMA stimulation and ischemia/reperfusion in vivo Adv Exp Med Biol, 411:513-518. Online Publication

Kjalke, M, JA Oliver, DM Monroe, M Hoffman, M Ezban, U Hedner, and HR Roberts. 1997. The effect of active site-inhibited factor VIIa on tissue factor-initiated coagulation using platelets before and after aspirin administration. Thromb Haemost, 78:1202-1208. Online Publication

Monroe, DM, M Hoffman, JA Oliver, and HR Roberts. 1997. Platelet activity of high-dose factor VIIa is independent of tissue factor. Br J Haematol, 99:542-547. Online Publication

Lovley, D., J. Coates, D. Saffarini and D. Lonergan. 1997. Dissimilatory Iron Reduction. In:, G. Winkelmann and C. Carrano (Eds), Transition metals in microbial metabolism., pp 187-215.

Sarah B. Kennet*, Ava J. Udvadia*, and Jonathan M. Horowitz 1997. Sp3 Encodes Multiple Proteins That Differ in Their Capacity to Stimulate or Repress Transcription. Nucleic Acids Research, 25: 3110-3117.

1996

Heathcote, R.D. 1996. Spatial and temporal shifts in the regulation of neurogenesis in a peripheral ganglion. J. Comp. Neurol., 375, 457-466. Online Publication

Kartasheva N.N., Kuchin S. V., Benevolensky S.V. 1996. Genetic aspects of carbon catabolite repression of the STA2 glucoamylase gene in Saccharomyces cerevisiae. Yeast, 12, 1297-1300.

Song W., Treich I., Qian N., Kuchin S., Carlson M. 1996. SSN genes that affect transcriptional repression in Saccharomyces cerevisiae encode SIN4, ROX3, and SRB proteins associated with RNA polymerase II. Mol. Cell. Biol., 16, 115-120.

Sandgren CD, Hall SA, and Barlow SB. 1996. Siliceous scale production in chrysophyte and synurophyte algae. I. Effects of silica-limited growth on cell silica content, scale morphology and the construction of the scale layer of Synura petersenii Korsh. Journal of Phycology, 32: 675-692.

Sandgren CD, Ihde TF and Lykhoshway YeV. 1996. Morphological descriptions and stratigraphic distributions of chrysophyte cysts (stomatocysts) from the recent sediments of Lake Baikal, Siberia. Journal of Paleolimnology, 15: 271-277 Online Publication

Ulijasz AT, Grenader A, Weisblum B 1996. A vancomycin-inducible lacZ reporter system in Bacillus subtilis: induction by antibiotics that inhibit cell wall synthesis and by lysozyme. J. Bacteriol, 178: 6305-9.

Witten JL and Truman JW 1996. Steroid regulation of neuropeptide plasticity in motoneurons during metamorphosis of an insect. J. Neurobiology, 29: 99-114. Online Publication

Witten JL and Truman JW 1996. Developmental plasticity of neuropeptide expression in motoneurons of the moth, Manduca Sexta: Steroid hormone regulation. J. Neurobiology, 29:99-114. Online Publication

Kingan TG, Shabanowitz J, Hunt DF and Witten, JL 1996. Characterization of two myotropic neuropeptides in the FMRFamide family from the segmental ganglia of the moth Manduca sexta: Candidate neurohormones and neuromodulators. J. Exp. Biol., 199: 1095-1104. Online Publication

1995

Kuchin S., Yeghiayan P., Carlson M. 1995. Cyclin-dependent protein kinase and cyclin homologs SSN3 and SSN8 contribute to transcriptional control in yeast. Proc. Natl. Acad. Sci. USA, 92, 4006-4010.

Hoffman, M, DM Monroe, JA Oliver, and HR Roberts. 1995. Factor IXa and Xa play distinct roles in tissue factor-dependent initiation of coagulation. Blood, 86:1794-1801. Online Publication

Nealson, K.H., D. Moser and D. Saffarini. 1995. Anaerobic electron acceptor chemotaxis in Shewanella putrefaciens. Applied and Environmental Microbiology, 61:1551-1554. Online Publication

Sandgren CD and Walton WE. 1995. Zooplankton herbivory and chrysophyte biogeography. In: Sandgren, C.D., Smol, J., & J. Kristiansen (eds). 1995. Chrysophyte algae: Ecology, Phylogeny and Development. Cambridge University Press., 269-302

Ava J. Udvadia, Dennis J. Templeton, and Jonathan M. Horowitz 1995. Functional Interactions Between the Retinoblastoma (Rb) Protein and Sp-Family Members: Superactivation by Rb Requires Amino Acids Necessary for Growth Suppression. Proceedings of the National Academy of Science USA, 92: 3953-3957.

Jonathan M. Horowitz and Ava J. Udvadia 1995. Regulation of Transcription by the Retinoblastoma (Rb) Protein. Molecular and Cellular Differentiation, 3: 275-314.

1994

Heathcote, R.D. and Chen, A. 1994. Morphogenesis of catecholaminergic interneurons in the frog spinal cord. J. Comp. Neurol., 342, 57-68. Online Publication

Goldberger, A, KA Middleton, JA Oliver, C Paddock, H-C Yan, HM DeLisser, SM Albelda, and PJ Newman. 1994. Biosynthesis and processing of the cell adhesion molecule PECAM-1 includes production of a soluble form. J Biol Chem, 269:17183-17189. Online Publication

Nealson, K., D. Saffarini, D. Moser and M.J. Smith. 1994. A method for monitoring tactic responses of bacteria under anaerobic conditions. J. Microbiological Methods., 20:211-218. Online Publication

Saffarini, D., T. DiChristina, D. Bermudes and K. Nealson. 1994. Anaerobic respiration of Shewanella putrefaciens requires both chromosomal and plasmid-borne genes. FEMS Microbiol. Lett., 119:271-278. Online Publication

Nealson, K. and D. Saffarini. 1994. Iron and manganese in anaerobic respiration: Environmental significance, physiology and regulation. Ann. Rev. Microbiol., 48:311-343. Online Publication

Nealson, K., Saffarini, D., Lukiewicz, S. 1994. Bacterial mutant strains unable to reduce nitroxides. Current Topics in Biophysics, 18:39-45.

Yoshihiko Murata, Hyung Goo Kim, Kathleen T. Rogers, Ava J. Udvadia, and Jonathan M. Horowitz 1994. Negative Regulation of Sp1 Transactivation Is Correlated With the Binding of Cellular Proteins to the Amino Terminus of the Sp-1 Trans-Activation Domain. Journal of Biological Chemistry, 269: 20674-20681.

1993

Heathcote, R.D. and Chen, A. 1993. A nonrandom interneuronal pattern in the developing frog spinal cord. J. Comp. Neurol., 328, 437-448. Online Publication

Kuchin S. V., Kartasheva N.N., Benevolensky S.V. 1993. Genes required for the derepression of an extracellular glucoamylase gene, STA2, in the yeast Saccharomyces. Yeast, 9, 533-541.

Saffarini, D.A. and K.H. Nealson. 1993. Sequence and genetic characterization of etrA, an fnr analog that regulates anaerobic respiration in Shewanella putrefaciens MR-1. J. Bacteriol., 175:7938-7944. Online Publication

Ava J. Udvadia, Kathleen T. Rogers, Peter D. R. Higgins, Yoshihiko Murata, Karen H. Martin, Peter A. Humphrey and Jonathan M. Horowitz 1993. Humphrey and Jonathan M. Horowitz 1993. Sp-1 Binds Promoter Elements Regulated by the Rb Protein and Sp-1 Mediated Transcription is Stimulated by Rb Co-Expression. Proceedings of the National Academy of Science USA, 90: 3265-3269.

Pfluger HJ, Witten JL, and Levine RB 1993. Fate of abdominal ventral unpaired median cells during metamorphosis of the hawkmoth, Manduca sexta. J. Comp. Neurol., 355: 508-522. Online Publication

1992

Ava J. Udvadia, Kathleen T. Rogers, and Jonathan M. Horowitz 1992. A Common Set of Nuclear Factors Bind to Promoter Elements Regulated by the Retinoblastoma Protein. Cell Growth and Differentiation, 3: 597-607.

1991

Collins, M. L. P. , L. A. Buchholz, and C. C. Remsen. 1991. The effect of copper on Methylomonas albus BG8. Appl. Env. Microbiol., 57: 1261-1264. Online Publication

Hessner, M. H., P. J. Wejksnora, and M. L. P. Collins. 1991. Construction characterization, and complementation of Rhodospirillum rubrum puf region mutants. J. Bacteriol., 173: 5712-5722. Online Publication

Suntsov N.I., Kuchin S. V., Neystat M.A., Mashko S.V., Benevolensky S.V. 1991. Production of the STA2-encoded glucoamylase in Saccharomyces cerevisiae is subject to feed-back control. Yeast, 7, 119-125.

Sandgren CD. 1991. Chrysophyte reproduction and resting cysts: a paleolimnologist's primer. Journal of Paleolimnology, 5:1-9

Witten JL and Truman JW 1991. The regulation of transmitter expression in postembryonic lineages in the moth, Manduca sexta. I: Transmitter identification and developmental acquisition of expression. J. Neurosci., 11: 1980-89. Online Publication

Witten JL and Truman JW 1991. The regulation of transmitter expression in postembryonic lineages in the moth, Manduca sexta. II: Role of cell lineage and birth order. J. Neurosci., 11: 1990-97. Online Publication

1990

Kuchin S. V., Neystat M.A., Gerasimenko O.G., Mashko S.V., Benevolensky S.V. 1990. Mutational analysis of the starch utilization system of Saccharomyces cerevisiae. Mol. Biol. Mikrobiol. Virusol., 5, 27-29.

Sandgren CD and Lehman JT. 1990. Response of chlorophyll a, phytoplankton, and microzooplankton to the invasion of Lake Michigan by Bythotrephes. Verh. Internat. Verein. Limnol., 24: 386-392.

1985

Witten JL and O'Shea M 1985. Peptidergic innervation of insect skeletal muscle: Immunochemical observations. J. Comp. Neurol., 242:93-101. Online Publication


* Authors contributed equally to this work.